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CDS Information : KSE_31220

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close this sectionGenomic map

Display Clone

Kitasatospora setae NBRC 14216T chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Kitasatospora setae NBRC 14216T
Replicon chromosome
Start / Stop / Direction 3,521,503 / 3,520,319 / -
Location complement(3520319..3521503)
Type CDS
Length 1,185 bp (394 aa)

close this sectionAnnotation

Product putative alanine racemase
Gene name alr
Functional category
- metabolism of amino acids and related molecules
EC number 5.1.1.1
Note
KEGG pathway map:00252 KO:K01775
map:00473 KO:K01775
Sequence feature

48 (a.a.)ACT_SITE
48 (a.a.)BINDING
283 (a.a.)ACT_SITE


References HAMAP:MF_01201

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=1e-149C9N5Y4_9ACTOAlanine racemaseAlignment
2E=1e-145ALR_STRCOAlanine racemaseAlignment
3E=1e-144B5G8N8_9ACTOAlanine racemaseAlignment
4E=1e-143D1XCR0_9ACTOAlanine racemaseAlignment
5E=1e-143Q82DK9_STRAWAlanine racemaseAlignment
HAMAP
Database:HAMAP:20070519
 [15-389]  36.192 MF_01201
MF_01201   ALR
InterPro
Database:interpro:26.0
IPR000821 Alanine racemase region (Domain)
 [40-56]  6.4e-57 PR00992 [76-94]  6.4e-57 PR00992 [140-152]  6.4e-57 PR00992 [177-188]  6.4e-57 PR00992 [220-247]  6.4e-57 PR00992 [278-293]  6.4e-57 PR00992 [295-310]  6.4e-57 PR00992 [316-333]  6.4e-57 PR00992 [371-384]  6.4e-57 PR00992
PR00992   ALARACEMASE
 [15-389]  32.431 MF_01201
MF_01201   ALR_MF_01201
 [15-390]  1.2e-100 TIGR00492
TIGR00492   alr: alanine racemase
 [45-55]  PS00395
PS00395   ALANINE_RACEMASE
IPR001608 Alanine racemase, N-terminal (Domain)
 [22-247]  8.2e-54 PF01168
PF01168   Ala_racemase_N
IPR009006 Alanine racemase/group IV decarboxylase, C-terminal (Domain)
 [253-391]  2.1e-58 SSF50621
SSF50621   Alanine racemase C-terminal domain-like
 [249-388]  5.5e-44 G3DSA:2.40.37.10
G3DSA:2.40.37.10   no description
IPR011079 Alanine racemase, C-terminal (Domain)
 [262-389]  3.2e-39 PF00842
PF00842   Ala_racemase_C
IPR020622 Alanine racemase, pyridoxal-phosphate attachment site (Binding_site)
 [45-55]  PS00395
PS00395   ALANINE_RACEMASE
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 394 amino acids
molecular mass 41,188.66 Da
pI 6.59
aa composition
AlaValLeuIlePheTrpProMetGlySer
15.7
(62aa)
8.1
(32aa)
10.4
(41aa)
2.8
(11aa)
1.5
(6aa)
2.3
(9aa)
6.6
(26aa)
1.3
(5aa)
12.2
(48aa)
4.6
(18aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.6
(22aa)
1
(4aa)
1.5
(6aa)
2.8
(11aa)
2.3
(9aa)
1
(4aa)
2.8
(11aa)
7.6
(30aa)
5.1
(20aa)
4.8
(19aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G20-001-141 KS1E11L00031B05 3,494,428 3,530,909 36,482
G20-001-142 KS1E11L00044G03 3,519,333 3,557,060 37,728

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.