CDS Information : KSE_46080

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Kitasatospora setae NBRC 14216T chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kitasatospora setae NBRC 14216T
Replicon	chromosome
Start / Stop / Direction	5,094,054 / 5,096,246 / +
Location	5094054..5096246
Type	CDS
Length	2,193 bp (730 aa)

Product	putative germacradienol/geosmin synthase
Gene name	geoA
Functional category	Other functions - antibiotic production
EC number
Note
KEGG pathway
Sequence feature
References	Uniprot:Q82L49 Pubmed:18492804

BLASTP Database:UniProtKB:2010_04 show BLAST table	1 E=0 C9N2Y4_9ACTO Terpene synthase metal-binding domain protein Alignment 2 E=0 D1XLU0_9ACTO Terpene synthase metal-binding domain protein Alignment 3 E=0 B1VN43_STRGG Putative germacradienol synthase Alignment 4 E=0 D1WYQ7_9ACTO Terpene synthase metal-binding domain protein Alignment 5 E=0 B5HD67_STRPR Germacradienol/germacrene D synthase Alignment
HAMAP	No significant hit
InterPro Database:interpro:26.0	IPR005630 Terpene synthase, metal-binding (Domain) PF03936   Terpene_synth_C IPR008949 Terpenoid synthase (Domain) G3DSA:1.10.600.10   no description SSF48576   Terpenoid synthases
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	730 amino acids
molecular mass	81,520.44 Da
pI	4.61
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 11.5 (84aa) 5.3 (39aa) 11.1 (81aa) 2.3 (17aa) 3.7 (27aa) 2.6 (19aa) 6.6 (48aa) 2.3 (17aa) 7.3 (53aa) 5.2 (38aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.2 (38aa) 1.1 (8aa) 3.2 (23aa) 2.3 (17aa) 3.8 (28aa) 1.5 (11aa) 2.7 (20aa) 7.5 (55aa) 7.4 (54aa) 7.3 (53aa)

>KSE_46080 putative germacradienol/geosmin synthase
GTGGCTCAGCCGTTCGAACTGCCGGACTTCTACGTGCCGTATCCGGCCCGGATCAACCCG
CACTACGAGAGGGCGCGGGTCCACACCAAGGAGTGGGCGCGCGGCTTCGGCATGCTGGAG
GGCTCCGGCGTCTGGGAGGAGCACGACCTCGACTCGCACGACTACGCGCTGCTCTGCTCC
TACACCCACCCGGACTGCGGCCCCGAGGCGCTCGACCTGGTCACCGACTGGTACACCTGG
GTCTTCTTCTTCGACGACCACTTCCTGGAGACCTTCAAGCGCACCCTGGACCGCGAGGGC
GGCAAGGCGTACCTGGACCGGCTGCCCGCCTTCATGCCGATGGACCCCGAGGCCGGCTAC
CCCGAGCCCACCAACCCGGTCGAGGCCGGCCTGGCCGACCTGTGGCGGCGCACCGTCCCG
CACATGTCGGCCGACTGGCGGGCCCGGTTCGCCGAGTCCACCCGGAACCTGCTGAACGAG
TCGCTCTGGGAGCTCTCCAACATCAACGAGGGCCGGATCTCGAACCCGGTCGAGTACATC
GAGATGCGCCGCAAGGTCGGCGGCGCCCCCTGGTCGGCCGGCCTGATCGAGTACGCGGCG
AACGCCGAGGTCCCCGAGTCGGTGGCGCACTCCCGGCCGCTGCGCGTGCTGCGCGACGCC
TTCTCGGACAGCGTGCACCTGCGCAACGACCTGTTCTCGTACGAGCGGGAGATCGGCGAG
GAGGGCGAGCTCAGCAACGGCGTCCTGGTCCTGGAGACCTTCCTCGGCTGCTCCACCCAG
CAGGCCGCCGACGCCGTCAACGACCTGCTCACCTCCCGGCTCCAGCAGTTCGAGAACACC
GCGCTCACCGAACTCGCCCCGCTCTGCGCCGAGCACGCGCTGGACCCGGAGGAGGCCGGC
CGGGTGCTGGCCTACGTCAAGGGCATGCAGGACTGGCAGTCCGGCGGCCACGAGTGGCAC
ATGCGCTCCAGCCGGTACATGAACGGCGGCGGCGCCGCCGCGCCCGCCACCGGCCCCACC
GGCCTGGGCACCTCGGCGGCGAACATCCGGCTCACGGCGGGCCTGCGCGGCCTGCGCGGC
CTCGCCCACACCCCGTACCGGAAGACCGGCCCGGCCCTGCTGCCCGACTTCCCGATGCCG
TTCCCGCTGTCGATCAACCCGCACCTGGACGCCGCCCGCGCGTACGTGGTCGGCTGGGCC
CGCAGCACCGGCCTGCTCGACCCCGAGCCCGGCGTGCCCGCCTCCGACATCTGGACCGAG
GCCAAGCTCCGCGACTACGACTTCCCGCTCTGCGCGGCCGGCATCGACCCCGACGGCACC
CCCGCCGAGCTCGACCTCTCCTCCGCCTGGCTGACCTGGGGCACCTACGCCGACGACTAC
TACCCCGCCGTCTACGGCCGCCCGCGCGACCTGCTCGGCGCGAAGGCCCAGGGCGAGCGG
CTGCACGCCCTGATGACGCTCGACGGCACCCTGCCGTTCGCGCCGCGCAACGCGCTGGAG
ACCGGCCTCGCCGACCTCTGGCGGCGCACCGTCGCCCCGTTCGACCAGGGCGCCCGGGCC
AAGTTCCGGCAGGCCGTCGGCGACATGCTCGACAGCTGGCTCTGGGAGCTCGCCAACACC
GCGCAGAACCGGATCCCCGACCCGGTCGACTACATCGAGATGCGCCGCGCCACCTTCGGC
TCCGACCTGACGATGAGCCTGTCCCGGCTCGGCCGCGGCGACACCATCCCCGCCGAGGTG
TACGCCAGCGGCACCCTGCGGGCGATCGAGAACTCCGCCGCCGACTACGGCTGCCTGGTC
AACGACCTGCACTCGTACCAGAAGGAGGTCGAGTACGAGGGCGAGTTCCACAACCTGGTC
CGGGTGGTGGAGAACTTCTTCTCCTGCGACTACCCCGTCGCCGCCGACATCGTGGCCGAC
CTGATGGCCTCCCGGCTCAGCCAGTTCCGGCACGTGGTCGACAGCGAACTCCCGCTGCTC
AAGCAGGACTTCGCCCTCGACGCCGAGGCCGCCCGGGCCCTCGACGGATACGTCCGCGAG
CTGGAGGACTGGATGGCCGCCGTCCTCAACTGGCACCAGCAGTGCGACCGCTACACGGAG
GACGTGCTGCGCCGGCACTTCGCCCCGCCGACCGCCGTCACCCCGGAGCTCGGGATGTCG
GCGGCCCGGATCCTGCAGACCATCGGCAGGTAG


>KSE_46080 putative germacradienol/geosmin synthase
MAQPFELPDFYVPYPARINPHYERARVHTKEWARGFGMLEGSGVWEEHDLDSHDYALLCS
YTHPDCGPEALDLVTDWYTWVFFFDDHFLETFKRTLDREGGKAYLDRLPAFMPMDPEAGY
PEPTNPVEAGLADLWRRTVPHMSADWRARFAESTRNLLNESLWELSNINEGRISNPVEYI
EMRRKVGGAPWSAGLIEYAANAEVPESVAHSRPLRVLRDAFSDSVHLRNDLFSYEREIGE
EGELSNGVLVLETFLGCSTQQAADAVNDLLTSRLQQFENTALTELAPLCAEHALDPEEAG
RVLAYVKGMQDWQSGGHEWHMRSSRYMNGGGAAAPATGPTGLGTSAANIRLTAGLRGLRG
LAHTPYRKTGPALLPDFPMPFPLSINPHLDAARAYVVGWARSTGLLDPEPGVPASDIWTE
AKLRDYDFPLCAAGIDPDGTPAELDLSSAWLTWGTYADDYYPAVYGRPRDLLGAKAQGER
LHALMTLDGTLPFAPRNALETGLADLWRRTVAPFDQGARAKFRQAVGDMLDSWLWELANT
AQNRIPDPVDYIEMRRATFGSDLTMSLSRLGRGDTIPAEVYASGTLRAIENSAADYGCLV
NDLHSYQKEVEYEGEFHNLVRVVENFFSCDYPVAADIVADLMASRLSQFRHVVDSELPLL
KQDFALDAEAARALDGYVRELEDWMAAVLNWHQQCDRYTEDVLRRHFAPPTAVTPELGMS
AARILQTIGR

NBRC No.	clone name	start	stop	length(bp)
G20-001-206	KS1E11L0003806	5,072,310	5,107,733	35,424

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.