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CDS Information : KSE_46080

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close this sectionGenomic map

Display Clone

Kitasatospora setae NBRC 14216T chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Kitasatospora setae NBRC 14216T
Replicon chromosome
Start / Stop / Direction 5,094,054 / 5,096,246 / +
Location 5094054..5096246
Type CDS
Length 2,193 bp (730 aa)

close this sectionAnnotation

Product putative germacradienol/geosmin synthase
Gene name geoA
Functional category Other functions
- antibiotic production
EC number
Note
KEGG pathway
Sequence feature
References Uniprot:Q82L49 Pubmed:18492804

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=0C9N2Y4_9ACTOTerpene synthase metal-binding domain proteinAlignment
2E=0D1XLU0_9ACTOTerpene synthase metal-binding domain proteinAlignment
3E=0B1VN43_STRGGPutative germacradienol synthaseAlignment
4E=0D1WYQ7_9ACTOTerpene synthase metal-binding domain proteinAlignment
5E=0B5HD67_STRPRGermacradienol/germacrene D synthaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:26.0
IPR005630 Terpene synthase, metal-binding (Domain)
 [20-277]  2.3e-32 PF03936 [421-649]  8.6e-21 PF03936
PF03936   Terpene_synth_C
IPR008949 Terpenoid synthase (Domain)
 [9-324]  1.9e-98 G3DSA:1.10.600.10 [376-696]  1.1e-80 G3DSA:1.10.600.10
G3DSA:1.10.600.10   no description
 [8-324]  1.1e-78 SSF48576 [375-696]  4.9e-69 SSF48576
SSF48576   Terpenoid synthases
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 730 amino acids
molecular mass 81,520.44 Da
pI 4.61
aa composition
AlaValLeuIlePheTrpProMetGlySer
11.5
(84aa)
5.3
(39aa)
11.1
(81aa)
2.3
(17aa)
3.7
(27aa)
2.6
(19aa)
6.6
(48aa)
2.3
(17aa)
7.3
(53aa)
5.2
(38aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.2
(38aa)
1.1
(8aa)
3.2
(23aa)
2.3
(17aa)
3.8
(28aa)
1.5
(11aa)
2.7
(20aa)
7.5
(55aa)
7.4
(54aa)
7.3
(53aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G20-001-206 KS1E11L0003806 5,072,310 5,107,733 35,424

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.