CDS Information : KSE_52620

Display	1000bp 10000bp 100000bp Clone

Kitasatospora setae NBRC 14216T chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Kitasatospora setae NBRC 14216T
Replicon	chromosome
Start / Stop / Direction	5,834,665 / 5,835,765 / +
Location	5834665..5835765
Type	CDS
Length	1,101 bp (366 aa)

Product	hypothetical protein
Gene name
Functional category	similar to unknown proteins
EC number
Note
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:2010_04 show BLAST table	1 E=0 B5GDA3_9ACTO Putative uncharacterized protein Alignment 2 E=0 B5HFL0_STRPR Putative uncharacterized protein Alignment 3 E=0 B5GZ31_STRCL Putative uncharacterized protein Alignment 4 E=0 D1XE94_9ACTO Radical SAM enzyme, Cfr family Alignment 5 E=1e-180 D1WZF3_9ACTO Radical SAM enzyme, Cfr family Alignment
HAMAP	No significant hit
InterPro Database:interpro:26.0	IPR004383 Ribosomal RNA large subunit methyltransferase RlmN; (Family) TIGR00048   TIGR00048: radical SAM enzyme, Cfr family PIRSF006004   Predicted radical SAM enzyme, Cfr type MF_01849   RLMN_MF_01849 IPR006638 Elongator protein 3/MiaB/NifB (Domain) SM00729   no description IPR007197 Radical SAM (Domain) PF04055   Radical_SAM
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	366 amino acids
molecular mass	40,219.81 Da
pI	7.47
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 10.1 (37aa) 7.1 (26aa) 10.1 (37aa) 3.3 (12aa) 2.5 (9aa) 1.6 (6aa) 6.6 (24aa) 2.7 (10aa) 7.7 (28aa) 6.3 (23aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.7 (21aa) 1.9 (7aa) 3.3 (12aa) 2.7 (10aa) 1.4 (5aa) 3 (11aa) 1.9 (7aa) 9.6 (35aa) 6.3 (23aa) 6.3 (23aa)

>KSE_52620 hypothetical protein
ATGCCTAAGCCCGGAGAACTGACCTTTGTCGCGCCGCGCGGCGCCAAGCCCCCGCGACAC
CTCGCCGACCTCAGCCCTGCCGAGCGCAAGGAGGCCGTCGCCGAGCTGGGCGAACAGCCG
TTCCGCGCGAAGCAGCTGTCGAACCACTACTTCGGGCGGATGTCGGCCGACCCGGAGAGC
TGGACGGACATCCCGGCGGCCAGCCGGACGAAGCTGACCGAGGCGCTGCTGCCCGAGCTG
ATGTCCGTGGTGCGGCACGTCTCCTGCGACGACGACGCCACCCGCAAGACGCTGTGGAAG
CTGTTCGACGGCACGCTGGTCGAGTCGGTGCTGATGCGCTACCCGGACCGGGTCACGATG
TGCATCAGCTCGCAGGCCGGCTGCGGCATGAACTGCCCGTTCTGCGCGACCGGCCAGGCC
GGGCTGACCCGGAACCTGTCGACCGCGGAGATCGTCGAGCAGATCGCGTCCGGGATGCGC
GACCTCCGGACCGGGGCGGTCCCCGGCGGCGAGGCCCGGCTGTCCAACGTGGTGTTCATG
GGCATGGGCGAGCCGCTCGCCAACTACAACCGGGTGCTGTCGGCGATCCGCCGGCTGACC
GACCCGTCGCCGGACGGCTTCGGCCTCTCGCAGCGCGGCATCACCGTCTCCACCGTCGGC
CTGGTCCCGGCCATGCACCGCTTCGCCGACGAGGGCCTGAGCTGCCGCCTCGCGCTGTCG
CTGCACGCCCCGGACGACGAGCTGCGCGACGAGCTGGTGCCGGTCAACACCCGCTGGAAG
GTCGACGAGGTGCTGGACGCCGCGTGGAACTACGCGGAGAAGTCCGGCCGCCGGGTGTCC
ATCGAGTACGCGCTGATCAAGGACATCAACGACCAGGCGTGGCGCGCCGACCTGCTCGGC
CGGCTGATCCGGAACCGCCGGGTGCACGTGAACCTGATCCCGCTCAACCCGACCCCGGGC
TCGAAGTGGACGGCCTCCCGGCCCGAGGACGAGCGCGAGTTCGTCCGCCGCCTGCAGGCC
CACGGCGTGCCGACCACCGTCCGCGACACCCGCGGCCAGGAGATCGACGGCGCCTGCGGC
CAGCTGGCCGCGGCGGGCTGA


>KSE_52620 hypothetical protein
MPKPGELTFVAPRGAKPPRHLADLSPAERKEAVAELGEQPFRAKQLSNHYFGRMSADPES
WTDIPAASRTKLTEALLPELMSVVRHVSCDDDATRKTLWKLFDGTLVESVLMRYPDRVTM
CISSQAGCGMNCPFCATGQAGLTRNLSTAEIVEQIASGMRDLRTGAVPGGEARLSNVVFM
GMGEPLANYNRVLSAIRRLTDPSPDGFGLSQRGITVSTVGLVPAMHRFADEGLSCRLALS
LHAPDDELRDELVPVNTRWKVDEVLDAAWNYAEKSGRRVSIEYALIKDINDQAWRADLLG
RLIRNRRVHVNLIPLNPTPGSKWTASRPEDEREFVRRLQAHGVPTTVRDTRGQEIDGACG
QLAAAG

NBRC No.	clone name	start	stop	length(bp)
G20-001-236	KS1E11L00038G02	5,805,683	5,843,498	37,816
G20-001-237	KS1E11L00021C03	5,830,443	5,867,027	36,585

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.