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CDS Information : KSE_69240

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close this sectionGenomic map

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Kitasatospora setae NBRC 14216T chromosome

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Overview 
Genome

close this sectionLocation

Organism Kitasatospora setae NBRC 14216T
Replicon chromosome
Start / Stop / Direction 7,794,751 / 7,796,922 / +
Location 7794751..7796922
Type CDS
Length 2,172 bp (723 aa)

close this sectionAnnotation

Product putative alpha-amylase
Synonym: 1,4-alpha-D-glucan glucanohydrolase
Gene name
Functional category
- metabolism of carbohydrates and related molecules
- - specific pathways
EC number 3.2.1.1
Note
KEGG pathway map:00500 KO:K01176
Sequence feature

128 (a.a.)METAL
186 (a.a.)METAL
195 (a.a.)METAL
223 (a.a.)BINDING
229 (a.a.)METAL
317 (a.a.)BINDING


References Family/Domain:IPR006046
Uniprot:P22998 Pubmed:3266752

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=0C7PZN1_CATADAlpha amylase catalytic regionAlignment
2E=1e-180D3C4I7_9ACTOAlpha amylase catalytic regionAlignment
3E=1e-180D1S4P3_9ACTOAlpha amylase catalytic regionAlignment
4E=1e-173A8M6K2_SALAIAlpha-amylaseAlignment
5E=1e-169A4X8D0_SALTOAlpha amylase, catalytic regionAlignment
HAMAP No significant hit
InterPro
Database:interpro:26.0
IPR002044 Glycoside hydrolase, carbohydrate-binding (Domain)
 [531-613]  7.6e-29 PF00686 [628-718]  1e-30 PF00686
PF00686   CBM_20
 [522-622]  21.673 PS51166 [623-723]  22.753 PS51166
PS51166   CBM20
IPR006046 Glycoside hydrolase family 13 (Domain)
 [86-103]  3e-18 PR00110 [118-129]  3e-18 PR00110 [219-230]  3e-18 PR00110 [252-270]  3e-18 PR00110 [309-321]  3e-18 PR00110
PR00110   ALPHAAMYLASE
IPR006046 Glycoside hydrolase family 13 (Family)
 [86-103]  3e-18 PR00110 [118-129]  3e-18 PR00110 [219-230]  3e-18 PR00110 [252-270]  3e-18 PR00110 [309-321]  3e-18 PR00110
PR00110   ALPHAAMYLASE
IPR006047 Glycosyl hydrolase, family 13, catalytic region (Domain)
 [66-355]  4.2e-27 PF00128
PF00128   Alpha-amylase
IPR006048 Alpha-amylase, C-terminal all beta (Domain)
 [411-488]  5.7e-11 PF02806
PF02806   Alpha-amylase_C
 [408-493]  1.7e-37 SM00632
SM00632   no description
IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic region (Domain)
 [41-399]  2e-67 SM00642
SM00642   no description
IPR013780 Glycosyl hydrolase, family 13, all-beta (Domain)
 [405-494]  1.2e-27 G3DSA:2.60.40.1180
G3DSA:2.60.40.1180   no description
IPR013781 Glycoside hydrolase, catalytic core (Domain)
 [31-404]  1.6e-105 G3DSA:3.20.20.80
G3DSA:3.20.20.80   no description
IPR013783 Immunoglobulin-like fold (Domain)
 [522-622]  5.1e-27 G3DSA:2.60.40.10 [623-723]  9.2e-31 G3DSA:2.60.40.10
G3DSA:2.60.40.10   no description
IPR013784 Carbohydrate-binding-like fold (Domain)
 [523-621]  7.6e-30 SSF49452 [624-723]  2.6e-32 SSF49452
SSF49452   Starch-binding domain-like
IPR017853 Glycoside hydrolase, catalytic core (Domain)
 [31-403]  7.4e-77 SSF51445
SSF51445   (Trans)glycosidases
SignalP
 [1-33]  1 Signal
Bacteria, Gram-positive   
TMHMM
 [7-29]  Transmembrane (i-o)
Transmembrane 1   
SOSUI
 [7-29]  Transmembrane
Transmembrane 1   

close this sectionCalculated information (Amino acid sequence)

size of protein 723 amino acids
molecular mass 74,897.56 Da
pI 4.8
aa composition
AlaValLeuIlePheTrpProMetGlySer
14.4
(104aa)
8.6
(62aa)
5.8
(42aa)
2.2
(16aa)
2.6
(19aa)
2.9
(21aa)
4.3
(31aa)
1.5
(11aa)
11.1
(80aa)
10.1
(73aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
7.5
(54aa)
1.1
(8aa)
6.4
(46aa)
3.6
(26aa)
4
(29aa)
2.6
(19aa)
1.4
(10aa)
2.5
(18aa)
4.8
(35aa)
2.6
(19aa)

open this sectionSequence