CDS Information : MCP_0016

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Methanocella paludicola SANAET (= NBRC 101707T) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Methanocella paludicola SANAET (= NBRC 101707T)
Replicon	chromosome
Start / Stop / Direction	11,471 / 11,016 / -
Location	complement(11016..11471)
Type	CDS
Length	456 bp (151 aa)

Product	30S ribosomal protein S19e
Gene name	rps19e
Functional category	Information Pathways - Translation
EC number
Note
KEGG pathway	map:03010 KO:K02966
Sequence feature
References	Family/Domain:IPR001266 Uniprot:Q94613 Pubmed:9332378

BLASTP Database:UniProtKB:15.0 show BLAST table	1 E=1e-56 Q0W5G8_UNCMA 30S ribosomal protein S19E Alignment 2 E=8e-44 Q2FTJ9_METHJ SSU ribosomal protein S19E Alignment 3 E=3e-43 Q12ZJ0_METBU SSU ribosomal protein S19E Alignment 4 E=7e-42 RS19E_PYRHO 30S ribosomal protein S19e Alignment 5 E=1e-41 B5IT46_9EURY Ribosomal protein S19e Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR001266 Ribosomal protein S19e (Family) PF01090   Ribosomal_S19e PD003854   Q8TIM9_METAC_Q8TIM9; PTHR11710   40S RIBOSOMAL PROTEIN S19 PS00628   RIBOSOMAL_S19E IPR018277 Ribosomal protein S19e, conserved site (Conserved_site) PS00628   RIBOSOMAL_S19E
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	Transmembrane 1

size of protein	151 amino acids
molecular mass	16,563.02 Da
pI	10.54
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 12.6 (19aa) 9.9 (15aa) 4.6 (7aa) 4 (6aa) 2 (3aa) 2 (3aa) 6 (9aa) 2 (3aa) 9.3 (14aa) 4 (6aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.3 (8aa) 0.7 (1aa) 0.7 (1aa) 7.3 (11aa) 3.3 (5aa) 7.9 (12aa) 1.3 (2aa) 7.9 (12aa) 4.6 (7aa) 4.6 (7aa)

>MCP_0016 30S ribosomal protein S19e
TTGGCAGTAGTCTATGATGTACCCGCTACCGCGTTCGTCGTAAAGGCGGGACAAAAACTA
AAGGAATCAGGCAAGGTCCAGGCCCCCGAGTGGGCCGCAGACGTGAAGACCGGCACGCAC
AGGCAGTACCCGCCGATCCAGCAGGACTGGTGGTACACGAGGTGCGCCTCCATATTAAGG
CGTATATATATTGACGGCCCGGTCGGCGTCCAGAGGCTCAGGAGCCTCTACGGCGGAAAG
AAGAACCGCGGCGTCAAGCCGGACAGGCACGAGAGGGGCAGCGGCTCCATTATCAGGGAC
GCGCTGCAGCAGCTCGAGAAGGCAGGGTTCGTCAAGGCCGTCAAGGGCGGCAGGGTCGTG
ACACCCCAGGGCATGGCGTTCCTGGACAGGGTAGCGACCGAGATGTCCGCAGCGGCGCCC
GCCGAGAAGCAGGCCACCCCGGAAGCACAGACGTAA


>MCP_0016 30S ribosomal protein S19e
MAVVYDVPATAFVVKAGQKLKESGKVQAPEWAADVKTGTHRQYPPIQQDWWYTRCASILR
RIYIDGPVGVQRLRSLYGGKKNRGVKPDRHERGSGSIIRDALQQLEKAGFVKAVKGGRVV
TPQGMAFLDRVATEMSAAAPAEKQATPEAQT

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.