CDS Information : MCP_0017

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Methanocella paludicola SANAET (= NBRC 101707T) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Methanocella paludicola SANAET (= NBRC 101707T)
Replicon	chromosome
Start / Stop / Direction	12,611 / 11,700 / -
Location	complement(11700..12611)
Type	CDS
Length	912 bp (303 aa)

Product	conserved hypothetical protein
Gene name
Functional category	Unknown Function - Similar to unknown protein
EC number
Note	Contains one ATP-grasp fold domain (IPR011761). Similar to ribosomal protein S6 modification protein in Archaeoglobus fulgidus (O27981).
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:15.0 show BLAST table	1 E=1e-138 Q0W5G4_UNCMA 30S ribosomal protein S6 modification protein Alignment 2 E=2e-79 O27981_ARCFU Ribosomal protein S6 modification protein (RimK) Alignment 3 E=8e-61 A0B9T7_METTP RimK domain protein ATP-grasp Alignment 4 E=6e-55 A6US45_METVS RimK domain protein ATP-grasp Alignment 5 E=6e-55 Q6M036_METMP Putative SSU ribosomal protein S6 modification protein Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR011761 ATP-grasp fold (Domain) PS50975   ATP_GRASP IPR013651 ATP-grasp fold, RimK-type (Domain) PF08443   RimK
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	303 amino acids
molecular mass	34,658.83 Da
pI	7.88
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 6.6 (20aa) 7.6 (23aa) 8.9 (27aa) 5.3 (16aa) 5.6 (17aa) 1 (3aa) 5.3 (16aa) 2.3 (7aa) 6.9 (21aa) 5 (15aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 3 (9aa) 1.7 (5aa) 3.6 (11aa) 1 (3aa) 5 (15aa) 7.9 (24aa) 2 (6aa) 6.9 (21aa) 7.9 (24aa) 6.6 (20aa)

>MCP_0017 conserved hypothetical protein
ATGAAGATCGGGTGTTTCGTGGAAAAGTATAGTTTCCACACCAGAGAGGAAGCCACGGCC
CTCGACCGCTTTAAAAGGGCGGCGGAGGCTAAGGGCCACCTCTTCGAGTATATTTTTAAG
AGGGACATGGACCGCATCCCCGAGTACGACGCGGTCTTCATCCGGGCCACCACCGACCCC
ATGAACACGGCGTACGTGGTGTCGAGGATGGCCGACGCCCTGGGCAAGGTGGTCATCGAC
GACCCCCACTCCATCCGGGTGTGCTCCTCGAAAGTGGTTTTAGACGACCTGTTCAGGCAG
AACGGCATCCCCTCCCCTAAGTCGCTGCTGTTCGCGGGCGACTTCGGCGAGGAGAACCTG
AGGCACGTCTTCGAATACCTGGGCTTCCCGCTCGTCCTCAAGGCACCCTATACGAAGTTC
TCCTCGCACGTGGAGAAGGCCCACGACGGGGCCGAGTTCCGGCTCATCGCGGCCCGATAC
CTGAAGAACGCCACCCCGATCGTATTGCAGGAGTACATGCCCTCGGGATTCGACTGGCGG
GTCGGCATGCTGGACAACAAGATCCTTTACCTGTGTAAATATTATATGCCCCGGGGCGGG
TGGAAGGTGAGGTCTCTCGTCGACGGCAAGAACCAGTGGGGCCGCGTCGTCCCTATTTTA
AGGAAGAACGCCCCGAAGAAGCTGGAGGAGCTGGCCGTGAACGTCTCGAAGTGCGTGGGC
GACGGGCTGTACGGGCTTGACGTAAAAGAAATAGACGGCAGGTTCTTCTGCATCGAGATC
AACGATAACCCGAGCTTCTATGCCGACCTCGAGGACGGCAAGGACCCCGACCTGTACGAG
AAGATCATCGACAGGCTTACCTCGGGCAGGCCCGTGAAGCCGGGCACATACAGGCTGAAC
GAAGAATCCTAA


>MCP_0017 conserved hypothetical protein
MKIGCFVEKYSFHTREEATALDRFKRAAEAKGHLFEYIFKRDMDRIPEYDAVFIRATTDP
MNTAYVVSRMADALGKVVIDDPHSIRVCSSKVVLDDLFRQNGIPSPKSLLFAGDFGEENL
RHVFEYLGFPLVLKAPYTKFSSHVEKAHDGAEFRLIAARYLKNATPIVLQEYMPSGFDWR
VGMLDNKILYLCKYYMPRGGWKVRSLVDGKNQWGRVVPILRKNAPKKLEELAVNVSKCVG
DGLYGLDVKEIDGRFFCIEINDNPSFYADLEDGKDPDLYEKIIDRLTSGRPVKPGTYRLN
EES

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.