CDS Information : MCP_0020

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Genomic map

Display	Clone

Methanocella paludicola SANAE^T (= NBRC 101707^T) chromosome

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Overview
Genome
Clone

Center position		change
ID		change
Gene name		change

Genome	Display	Sync
chromosome

Location

Organism	Methanocella paludicola SANAE^T (= NBRC 101707^T)
Replicon	chromosome
Start / Stop / Direction	14,781 / 13,933 / -
Location	complement(13933..14781)
Type	CDS
Length	849 bp (282 aa)

Annotation

Product	conserved hypothetical protein
Gene name
Functional category	Unknown Function - Similar to unknown protein
EC number
Note	Belongs to the Protein of unknown function DUF1119, archaea family (IPR010545).
KEGG pathway
Sequence feature
References

Computational search results

BLASTP
Database:UniProtKB:15.0

show BLAST table

1	E=1e-101	Q0W5J2_UNCMA	Putative uncharacterized protein	Alignment
2	E=3e-71	Q8PYF3_METMA	Conserved protein	Alignment
3	E=4e-70	Q8TIY9_METAC	Putative uncharacterized protein	Alignment
4	E=6e-67	Q12UT4_METBU	Putative uncharacterized protein	Alignment
5	E=5e-63	Q46EK5_METBF	Putative uncharacterized protein	Alignment

HAMAP

No significant hit

InterPro
Database:interpro:18.0

IPR006639 Peptidase A22, presenilin signal peptide (Family)
	SM00730 no description
IPR010545 Protein of unknown function DUF1119 (Family)
	PF06550 DUF1119

SignalP

No significant hit

TMHMM

Transmembrane 7

SOSUI

Transmembrane 7

Calculated information (Amino acid sequence)

size of protein

282 amino acids

molecular mass

30,382.76 Da

6.51

aa composition

Ala	Val	Leu	Ile	Phe	Trp	Pro	Met	Gly	Ser
9.9 (28aa)	11.3 (32aa)	16.7 (47aa)	7.8 (22aa)	4.6 (13aa)	1.4 (4aa)	5.3 (15aa)	5 (14aa)	8.2 (23aa)	6 (17aa)
Thr	Cys	Asn	Gln	Tyr	Lys	His	Arg	Asp	Glu
4.6 (13aa)	0.7 (2aa)	2.1 (6aa)	1.1 (3aa)	5 (14aa)	3.2 (9aa)	0.7 (2aa)	1.4 (4aa)	2.1 (6aa)	2.8 (8aa)

Sequence

>MCP_0020 conserved hypothetical protein
GTGATATCGCTCCTGCTGGTGCCGCCGCTGCAGAGCTACGAGCTGGACAACGTCTTCGGG
AACCCGGAGAGCGTGTGGAACTCCGTCTATTATGTCGTGCTGCTGTTGCTTTTCACGGGC
GCGCTGCTGCTCATCATCAAGTTCAAGATGAACTGGATCATCCAGGTCATCATGGGCATC
GCCATCCTGTCCACGCTGACCTACGTATTCTTCGGCCTGGCCGTGCTCCTGGCGCCTTCC
CTGGACCCGCTGATCGTCTCGGGGGCGGCAGTCGTGCTGTCGATCGTGCTCACCGCGCTG
CTGGTGCTGTACCCGGAGTGGTATGTCATCGACACGGTAGGCGTGATGGTGGCGGCGGGC
GCGAGCGCACTGTTCGGCGCGTCCCTGGCCATATTGCCGACGATCGTCCTGCTGGTGCTT
TTAGCCATATACGACTACATCTCCGTATACAAGACGAAGCACATGATCAGGCTCGCCGAG
GGCGTCATGGACACGAAGATGCCCATCATGTTCGTCATGCCCCGGAGGTGGGGCTACTCG
TACGTCCACGCGAAGGGCATAACGAGCGAGGGCGGGGAGAAGGAGGCGTACTTCATGGGG
CTGGGGGACGCGGTCATGCCCACCATCCTCGCCGTGTCGGCCAACGCGTTCCTGAGCGCC
CCCCGGCTCCTGGGGTTCGTGAGCCTGCCCGCGCTGGGCACGATGCTCGGCACGCTCGCC
AGCTACGTCGTCCTGATGTACATCGTGGTGGAGCTTAAAAAGCCGCAGGCGGGGCTGCCT
TTCCTGTGCACCGGGGCCATCGTGGGCTTCATGCTCGGGTGCCTGGCGGCCGGCATCAAC
CCGTTCTAA


>MCP_0020 conserved hypothetical protein
MISLLLVPPLQSYELDNVFGNPESVWNSVYYVVLLLLFTGALLLIIKFKMNWIIQVIMGI
AILSTLTYVFFGLAVLLAPSLDPLIVSGAAVVLSIVLTALLVLYPEWYVIDTVGVMVAAG
ASALFGASLAILPTIVLLVLLAIYDYISVYKTKHMIRLAEGVMDTKMPIMFVMPRRWGYS
YVHAKGITSEGGEKEAYFMGLGDAVMPTILAVSANAFLSAPRLLGFVSLPALGTMLGTLA
SYVVLMYIVVELKKPQAGLPFLCTGAIVGFMLGCLAAGINPF

Distribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.