CDS Information : MCP_0026

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Methanocella paludicola SANAET (= NBRC 101707T) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Methanocella paludicola SANAET (= NBRC 101707T)
Replicon	chromosome
Start / Stop / Direction	18,076 / 18,897 / +
Location	18076..18897
Type	CDS
Length	822 bp (273 aa)

Product	putative haloacid dehalogenase
Gene name
Functional category	Unknown Function - General function prediction only
EC number
Note
KEGG pathway
Sequence feature
References	Family/Domain:IPR005834

BLASTP Database:UniProtKB:15.0 show BLAST table	1 E=6e-33 Q2Y8B6_NITMU Haloacid dehalogenase-like hydrolase Alignment 2 E=1e-32 Q0W7U6_UNCMA Putative hydrolase (Haloacid dehalogenase superfamily) Alignment 3 E=2e-31 Q2LW24_SYNAS Haloacid dehalogenase-like hydrolase Alignment 4 E=2e-30 A6PQ56_9BACT HAD-superfamily hydrolase, subfamily IA, variant 3 Alignment 5 E=4e-29 B5EL17_ACIF5 Haloacid dehalogenase domain protein hydrolase Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR005834 Haloacid dehalogenase-like hydrolase (Domain) PF00702   Hydrolase IPR006439 HAD-superfamily hydrolase, subfamily IA, variant 1 (Family) TIGR01549   HAD-SF-IA-v1: HAD-superfamily hydrolase, su IPR023214 HAD-like domain (Domain) SSF56784   HAD-like G3DSA:3.40.50.1000   no description
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	273 amino acids
molecular mass	31,155.75 Da
pI	6.17
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 8.8 (24aa) 6.2 (17aa) 8.4 (23aa) 7 (19aa) 5.1 (14aa) 1.1 (3aa) 3.7 (10aa) 4.4 (12aa) 5.1 (14aa) 7 (19aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.1 (14aa) 0 (0aa) 2.9 (8aa) 3.3 (9aa) 3.7 (10aa) 5.5 (15aa) 1.5 (4aa) 7.3 (20aa) 6.2 (17aa) 7.7 (21aa)

>MCP_0026 putative haloacid dehalogenase
ATGATCACGACGATACTCTTCGACATCTACGGCACGCTCATCGACATCTCCACGGACGAG
TCGGACATGGCGACGTACAACGCCATGTCGAAGTGGCTCGAGTACAAGTACATCTACGTC
TCCGGGGATCAGCTGAAGTGGCTCTACCACGAGGAGTTCGCCCGCCGCCTGGGCTCGGAG
GAGGCCCGGAGCCGGGCGGAGGCCGACATCTTCAAGAGCATCATCGAGGAGTTCGAGGCC
CGCATCGGCGAGCACCGGGAGCTCTTCCCGGACGCCGACGTGCGGGACGTGTTCAAGAGC
ATCGTCACGAAGTTCGCCTCGAGGACCCCCGAGGAGCTCGACCACCTGTCCACGGACCTC
TCCCACCTTTTCAGGTCCGCCACGCGCAGGAAGATGTTCATCTACCCCACCGTCAAGCCC
GCGCTTGACCAGATGCAGAAGAAGTACCGGCTGGGCATCGTGTCCAACGCGCAGGAGGCG
TTCACCATGCCCGAGCTGGGGCTCTACGAGCTGGCCCGCTACTTCGAGACGATCGTCCTG
TCAAGCCAGGCCGGGGTAAAGAAGCCCAACTCCCGGATATTCACCCGTGCCCTGGGGAAC
CTGGGAGTGAGGCCGTCGGAGGCGGTCATGGTGGGCAACGACATGATGGCTGACATGATG
GGCGCCTCTAAGCTCGGCATGCGGACCATCTTCGTCTCGGACAGGCCTGCCCGGCCCATC
AAGGGGGTAGCGCCCGATGCCGTGGTCCAGGGCATCAACCTGTTCCAGGTGCTGGAGCTC
GTGGACGCATGGAACCAAAAACAGGCCCGAGAAAATATATAA


>MCP_0026 putative haloacid dehalogenase
MITTILFDIYGTLIDISTDESDMATYNAMSKWLEYKYIYVSGDQLKWLYHEEFARRLGSE
EARSRAEADIFKSIIEEFEARIGEHRELFPDADVRDVFKSIVTKFASRTPEELDHLSTDL
SHLFRSATRRKMFIYPTVKPALDQMQKKYRLGIVSNAQEAFTMPELGLYELARYFETIVL
SSQAGVKKPNSRIFTRALGNLGVRPSEAVMVGNDMMADMMGASKLGMRTIFVSDRPARPI
KGVAPDAVVQGINLFQVLELVDAWNQKQARENI

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.