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CDS Information : MCP_2125

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Methanocella paludicola SANAET (= NBRC 101707T) chromosome

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Overview 
Genome

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Organism Methanocella paludicola SANAET (= NBRC 101707T)
Replicon chromosome
Start / Stop / Direction 2,108,824 / 2,107,937 / -
Location complement(2107937..2108824)
Type CDS
Length 888 bp (295 aa)

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Product conserved hypothetical protein
Gene name
Functional category Unknown Function
- Similar to unknown protein
EC number
Note
KEGG pathway
Sequence feature
References

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BLASTP
Database:UniProtKB:15.0
1E=6e-92Q0W3B3_UNCMAPutative uncharacterized proteinAlignment
2E=3e-68A5ETW7_BRASBPutative DNA ligase-like proteinAlignment
3E=4e-66Q9ZC15_STRCOPutative uncharacterized protein SCO6498Alignment
4E=2e-65A7HFE5_ANADFDNA polymerase LigD polymerase domainAlignment
5E=9e-62A4FF44_SACENATP-dependent DNA ligaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR002755 DNA primase, small subunit (Family)
 [132-252]  1.2e-16 PF01896
PF01896   DNA_primase_S
IPR014145 DNA polymerase LigD, polymerase domain (Domain)
 [12-257]  2.2e-91 TIGR02778
TIGR02778   ligD_pol: DNA polymerase LigD, polymerase d
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 295 amino acids
molecular mass 33,525.09 Da
pI 7.23
aa composition
AlaValLeuIlePheTrpProMetGlySer
6.1
(18aa)
7.5
(22aa)
7.5
(22aa)
5.8
(17aa)
4.4
(13aa)
1
(3aa)
5.4
(16aa)
2.7
(8aa)
8.1
(24aa)
4.4
(13aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.1
(18aa)
0.3
(1aa)
2.7
(8aa)
2.4
(7aa)
4.4
(13aa)
5.8
(17aa)
2.4
(7aa)
8.5
(25aa)
9.5
(28aa)
5.1
(15aa)

open this sectionSequence