CDS Information : MCP_2125

Display	1000bp 10000bp 100000bp Clone

Methanocella paludicola SANAET (= NBRC 101707T) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Methanocella paludicola SANAET (= NBRC 101707T)
Replicon	chromosome
Start / Stop / Direction	2,108,824 / 2,107,937 / -
Location	complement(2107937..2108824)
Type	CDS
Length	888 bp (295 aa)

Product	conserved hypothetical protein
Gene name
Functional category	Unknown Function - Similar to unknown protein
EC number
Note
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:15.0 show BLAST table	1 E=6e-92 Q0W3B3_UNCMA Putative uncharacterized protein Alignment 2 E=3e-68 A5ETW7_BRASB Putative DNA ligase-like protein Alignment 3 E=4e-66 Q9ZC15_STRCO Putative uncharacterized protein SCO6498 Alignment 4 E=2e-65 A7HFE5_ANADF DNA polymerase LigD polymerase domain Alignment 5 E=9e-62 A4FF44_SACEN ATP-dependent DNA ligase Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR002755 DNA primase, small subunit (Family) PF01896   DNA_primase_S IPR014145 DNA polymerase LigD, polymerase domain (Domain) TIGR02778   ligD_pol: DNA polymerase LigD, polymerase d
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	295 amino acids
molecular mass	33,525.09 Da
pI	7.23
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 6.1 (18aa) 7.5 (22aa) 7.5 (22aa) 5.8 (17aa) 4.4 (13aa) 1 (3aa) 5.4 (16aa) 2.7 (8aa) 8.1 (24aa) 4.4 (13aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 6.1 (18aa) 0.3 (1aa) 2.7 (8aa) 2.4 (7aa) 4.4 (13aa) 5.8 (17aa) 2.4 (7aa) 8.5 (25aa) 9.5 (28aa) 5.1 (15aa)

>MCP_2125 conserved hypothetical protein
ATGACCGAAGTATTGCACATCGAAGGCCACGACATCAAAGTAACTAATCCGGATAAGGTA
TTATTCCCGGAGGACGGCATCACCAAAGGGGAGCTCGTCGACTATTACCGGCGTATCTCA
GGTGTGATGGTGCCCCTGGTCCGGGGGCGGCCCATGACCATGCAGCGTTTCCCGGACGGC
ATCGGCAAAGAAGGCTTTTTCCAGAAAGAGGCGTCCGACTATTTCCCCGACTGGGTGCAC
CGCGCCACGCTCGAGCTGGGAAAGGGCGGCATCCAGCACCAGGTCGTCTGTGACGACGCC
GCGACGCTCGTATACCTGGCCAGCCAGGCGATGATCACTCCCCACGTCTTTCTCAGCCGA
ATCGATAAAGTCCATTACCCTGACCGCCTCATCTTCGACCTCGACCCGCCCGATAATAAC
TTCGAGACCGTGCGGTCTGCCGCTAAGACGATCCGCGAGGCGCTCGATGCCGAAGGCTAT
CCCGTCTATCTCATGACCACTGGCTCCCGGGGCCTGCACGTCGTCGTGCCGCTCGACCGG
AGCGCCGACTTCGATACCGTCCGGGCGTTCGCCCGGGGCTTCGGCGAGAAGCTTACTAAG
AAGTATCCCGACCGCTTCACTATCGAACTCTCGAAAGAGAAGCGCCGTGGCCGCCTGTTC
CTGGACTATCTGCGGAACTCGTATGGTCAGACCGGCGTGGCGCCCTACGGTGTCCGGGCC
AGGAGCGGAGCGCCCGTCGCCACTCCCATAACATGGGATGAGCTTGATGATATTTCGGGT
TCGCAGGAGTACAATATCCGGAATATCATGGGTAGGATGGATAAGCGAGGCGATGCCTGG
AAATATATAGATAAGGATAGGACGAGCATAAAAAACCTTGATAATTAA


>MCP_2125 conserved hypothetical protein
MTEVLHIEGHDIKVTNPDKVLFPEDGITKGELVDYYRRISGVMVPLVRGRPMTMQRFPDG
IGKEGFFQKEASDYFPDWVHRATLELGKGGIQHQVVCDDAATLVYLASQAMITPHVFLSR
IDKVHYPDRLIFDLDPPDNNFETVRSAAKTIREALDAEGYPVYLMTTGSRGLHVVVPLDR
SADFDTVRAFARGFGEKLTKKYPDRFTIELSKEKRRGRLFLDYLRNSYGQTGVAPYGVRA
RSGAPVATPITWDELDDISGSQEYNIRNIMGRMDKRGDAWKYIDKDRTSIKNLDN

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.