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CDS Information : MW1709

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Staphylococcus aureus MW2 chromosome

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Overview 
Genome

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Organism Staphylococcus aureus MW2
Replicon chromosome
Start / Stop / Direction 1,864,432 / 1,863,251 / -
Location complement(1863251..1864432)
Type CDS
Length 1,182 bp (393 aa)

close this sectionAnnotation

Product riboflavin biosynthesis protein
Gene name ribA
Functional category Intermediary metabolism
- Metabolism of coenzymes and prosthetic groups
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionComparative genome

Display BBH1e-1001e-501e-101e-3
Staphylococcus epidermidis ATCC 12228Staphylococcus epidermidis RP62A
[1439] SE1439 0(640)
riboflavin biosynthesis protein
[1296] SERP1326 0(640)
3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II(ribBA)

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=0C5QKB6_STAAU3,4-dihydroxy-2-butanone-4-phosphate synthaseAlignment
2E=0C5N6J3_STAA33,4-dihydroxy-2-butanone-4-phosphate synthaseAlignment
3E=0RIBBA_STAAWRiboflavin biosynthesis protein ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase
GTP cyclohydrolase-2
GTP cyclohydrolase II
Alignment
4E=0RIBBA_STAASRiboflavin biosynthesis protein ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase
GTP cyclohydrolase-2
GTP cyclohydrolase II
Alignment
5E=0D2UT27_STAAU3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase IIAlignment
HAMAP No significant hit
InterPro
Database:interpro:25.0
IPR000422 DHBP synthase RibB (Domain)
 [6-198]  8.1e-80 PF00926
PF00926   DHBP_synthase
 [2-198]  1.5e-100 TIGR00506
TIGR00506   ribB: 3,4-dihydroxy-2-butanone-4-phosphate s
 [1-202]  37.873 MF_00180
MF_00180   RIBB_MF_00180
IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB (Family)
 [1-202]  37.873 MF_00180
MF_00180   RIBB_MF_00180
 [6-198]  8.1e-80 PF00926
PF00926   DHBP_synthase
 [2-198]  1.5e-100 TIGR00506
TIGR00506   ribB: 3,4-dihydroxy-2-butanone-4-phosphate s
IPR000926 GTP cyclohydrolase II (Domain)
 [206-369]  5.2e-63 PF00925
PF00925   GTP_cyclohydro2
 [203-393]  35.558 MF_00179
MF_00179   RIBA_MF_00179
 [206-393]  3.6e-81 TIGR00505
TIGR00505   ribA: GTP cyclohydrolase II
IPR000926 GTP cyclohydrolase II, RibA (Family)
 [203-393]  35.558 MF_00179
MF_00179   RIBA_MF_00179
 [206-393]  3.6e-81 TIGR00505
TIGR00505   ribA: GTP cyclohydrolase II
 [206-369]  5.2e-63 PF00925
PF00925   GTP_cyclohydro2
IPR016299 Riboflavin biosynthesis protein RibA (Family)
 [2-391]  54.42 MF_01283
MF_01283   RIBBA_MF_01283
 [1-393]  9e-150 PIRSF001259
PIRSF001259   GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase
IPR017945 DHBP synthase RibB-like alpha/beta domain (Domain)
 [1-202]  4.7e-84 SSF55821
SSF55821   YrdC/RibB
 [3-211]  1.8e-79 G3DSA:3.90.870.10
G3DSA:3.90.870.10   no description
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 393 amino acids
molecular mass 44,192.33 Da
pI 4.89
aa composition
AlaValLeuIlePheTrpProMetGlySer
7.4
(29aa)
5.3
(21aa)
8.7
(34aa)
8.7
(34aa)
3.8
(15aa)
0.3
(1aa)
2.5
(10aa)
3.6
(14aa)
6.9
(27aa)
3.3
(13aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.1
(24aa)
1.3
(5aa)
5.1
(20aa)
3.8
(15aa)
3.1
(12aa)
7.4
(29aa)
3.3
(13aa)
3.6
(14aa)
8.4
(33aa)
7.6
(30aa)

open this sectionSequence