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CDS Information : OBV_00040

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Oscillibacter valericigenes Sjm18-20T (= NBRC 101213T) chromosome

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Overview 
Genome

close this sectionLocation

Organism Oscillibacter valericigenes Sjm18-20T (= NBRC 101213T)
Replicon chromosome
Start / Stop / Direction 2,916 / 4,022 / +
Location 2916..4022
Type CDS
Length 1,107 bp (368 aa)

close this sectionAnnotation

Product DNA replication and repair protein RecF
Gene name recF
Functional category Genetic Information Processing
- Replication and Repair
EC number
Note
KEGG pathway KO:K03629
Sequence feature
References HAMAP:MF_00365

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=1e-117A6NQE4_9BACEDNA replication and repair protein recFAlignment
2E=2e-66C6LKK6_9FIRMDNA replication and repair protein recFAlignment
3E=8e-65RECF_EUBR3DNA replication and repair protein recFAlignment
4E=9e-65B0PBN6_9FIRMDNA replication and repair protein recFAlignment
5E=1e-64RECF_CLOPHDNA replication and repair protein recFAlignment
HAMAP
Database:HAMAP:20080521
 [1-368]  25.55 MF_00365
MF_00365   RECF
InterPro
Database:interpro:26.0
IPR001238 RecF protein (Family)
 [1-364]  25.782 MF_00365
MF_00365   RECF_MF_00365
 [117-137]  PS00617
PS00617   RECF_1
 [313-331]  PS00618
PS00618   RECF_2
 [1-366]  1.1e-82 TIGR00611
TIGR00611   recf: DNA replication and repair protein Rec
IPR003395 SMC protein, N-terminal (Domain)
 [3-345]  9.6e-17 PF02463
PF02463   SMC_N
IPR018078 DNA-binding, RecF, conserved site (Conserved_site)
 [313-331]  PS00618
PS00618   RECF_2
 [117-137]  PS00617
PS00617   RECF_1
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 368 amino acids
molecular mass 41,704.51 Da
pI 8.15
aa composition
AlaValLeuIlePheTrpProMetGlySer
10.3
(38aa)
6
(22aa)
12.2
(45aa)
4.6
(17aa)
4.9
(18aa)
0.3
(1aa)
3
(11aa)
0.5
(2aa)
4.9
(18aa)
5.2
(19aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.6
(17aa)
2.4
(9aa)
4.3
(16aa)
5.4
(20aa)
2.7
(10aa)
3.8
(14aa)
2.2
(8aa)
9.8
(36aa)
6
(22aa)
6.8
(25aa)

open this sectionSequence