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CDS Information : PH0001

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close this sectionGenomic map

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Pyrococcus horikoshii OT3T (= NBRC 100139T) chromosome

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Overview 
Genome

close this sectionLocation

Organism Pyrococcus horikoshii OT3T (= NBRC 100139T)
Replicon chromosome
Start / Stop / Direction 620 / 126 / -
Location complement(126..620)
Type CDS
Length 495 bp (164 aa)

close this sectionAnnotation

Product 50S ribosomal protein L11P
Gene name rpl11p
Functional category Genetic Information Processing
- Translation
EC number
Note
KEGG pathway
Sequence feature
References HAMAP:MF_00736
DOGAN:PH0001 Pubmed:16594895

close this sectionComparative genome

Table
Display BBH1e-1001e-501e-101e-3
Pyrococcus abyssi GE5Pyrococcus furiosus DSM 3638Thermococcus kodakaraensis KOD1
[2] PAB2353 4e-77(278)
50S ribosomal protein L11P(rpl11p)
[2046] PF1991 3e-75(272)
50S ribosomal protein L11P(rpl11p)
[1418] TK1418 1e-59(221)
50S ribosomal protein L11P(rpl11p)

close this sectionRelated links to external database

UniProtO57779
INSDBAA29069.1 (DDBJ GenBank EMBL)
RefSeqNP_142024.1
GI14589964
GeneID1443902
UniParcUPI0000133B8D

close this sectionComputational search results

BLASTP
Database:UniProtKB:12.5
1E=6e-86RL11_PYRHO50S ribosomal protein L11PAlignment
2E=9e-85RL11_PYRAB50S ribosomal protein L11PAlignment
3E=6e-83RL11_PYRFU50S ribosomal protein L11PAlignment
4E=2e-67RL11_PYRKO50S ribosomal protein L11PAlignment
5E=2e-59RL11_METJA50S ribosomal protein L11PAlignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR000911 Ribosomal protein L11 (Conserved_site)
 [124-139]  8e-05 PS00359
PS00359   RIBOSOMAL_L11
IPR000911 Ribosomal protein L11 (Domain)
 [5-68]  5.8e-20 SSF54747
SSF54747   Ribosomal_L11
 [69-138]  5.49999338756182e-22 G3DSA:1.10.10.250
G3DSA:1.10.10.250   Ribosomal_L11
 [5-64]  1.60000240695986e-21 PF03946
PF03946   Ribosomal_L11_N
 [64-139]  1.3e-27 SSF46906
SSF46906   Ribosomal_L11
 [69-137]  2.90000354677958e-28 PF00298
PF00298   Ribosomal_L11
IPR000911 Ribosomal protein L11 (Family)
 [69-138]  5.49999338756182e-22 G3DSA:1.10.10.250
G3DSA:1.10.10.250   Ribosomal_L11
 [4-143]  9.699999999999e-77 PIRSF002179
PIRSF002179   RplL11_L12
 [5-164]  2.80000504261125e-43 PTHR11661
PTHR11661   Ribosomal_L11
 [5-64]  1.60000240695986e-21 PF03946
PF03946   Ribosomal_L11_N
 [64-139]  1.3e-27 SSF46906
SSF46906   Ribosomal_L11
 [69-137]  2.90000354677958e-28 PF00298
PF00298   Ribosomal_L11
 [5-68]  5.8e-20 SSF54747
SSF54747   Ribosomal_L11
 [6-138]  5.09999999999957e-70 SM00649
SM00649   RL11
 [124-139]  8e-05 PS00359
PS00359   RIBOSOMAL_L11
 [6-59]  PD001367
PD001367   Ribosomal_L11
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 164 amino acids
molecular mass 17,691.82 Da
pI 7.53
aa composition
AlaValLeuIlePheTrpProMetGlySer
6.7
(11aa)		12.2
(20aa)		7.9
(13aa)		7.3
(12aa)		1.8
(3aa)		0
(0aa)		6.7
(11aa)		3.7
(6aa)		9.8
(16aa)		2.4
(4aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.9
(8aa)		0
(0aa)		2.4
(4aa)		4.9
(8aa)		0.6
(1aa)		12.2
(20aa)		0.6
(1aa)		1.8
(3aa)		3
(5aa)		11
(18aa)

open this sectionSequence