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CDS Information : PH0002.1

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close this sectionGenomic map

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Pyrococcus horikoshii OT3T (= NBRC 100139T) chromosome

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Overview 
Genome

close this sectionLocation

Organism Pyrococcus horikoshii OT3T (= NBRC 100139T)
Replicon chromosome
Start / Stop / Direction 1,090 / 632 / -
Location complement(632..1090)
Type CDS
Length 459 bp (152 aa)

close this sectionAnnotation

Product putative transcription antitermination protein NusG
Gene name
Functional category Genetic Information Processing
- Transcription
EC number
Note
KEGG pathway
Sequence feature
References Family/Domain:IPR001062

close this sectionComparative genome

Table
Display BBH1e-1001e-501e-101e-3
Pyrococcus abyssi GE5Pyrococcus furiosus DSM 3638Thermococcus kodakaraensis KOD1
[3] PAB2352 3e-81(292)
transcription antitermination protein NusG(nusG)
[2045] PF1990 1e-72(263)
transcription antitermination protein NusG(nusG)
[1419] TK1419 1e-70(257)
transcription antitermination protein NusG(nusG)

close this sectionRelated links to external database

UniProtO57778 : N-term changed (+9)
INSDBAA29070.1 (DDBJ GenBank EMBL) : N-term changed (+9)
RefSeqNP_142025.1 : N-term changed (+9)
GI14589965 : N-term changed (+9)
GeneID1443903 : N-term changed (+9)
UniParcUPI00000667A2 : N-term changed (+9)

close this sectionComputational search results

BLASTP
Database:UniProtKB:12.5
1E=2e-79O57778_PYRHO155aa long hypothetical transcription termination-antitermination factorAlignment
2E=4e-78Q9V2S2_PYRABNusG transcription antitermination proteinAlignment
3E=2e-69Q8TZK1_PYRFUTranscription antitermination protein nusGAlignment
4E=1e-67Q5JH33_PYRKOTranscription antitermination proteinAlignment
5E=1e-36Q0W048_UNCMA50S ribosomal protein L26EAlignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR001062 Bacterial transcription antitermination protein NusG (Domain)
 [3-77]  0.00065 PF02357
PF02357   NusG
IPR001062 Bacterial transcription antitermination protein NusG (Family)
 [3-77]  0.00065 PF02357
PF02357   NusG
IPR003257 Bacterial NusG ribosomal protein (Domain)
 [5-150]  9e-77 PD005267
PD005267   O57778_PYRHO_O57778;
IPR005824 KOW (Domain)
 [92-125]  1.2e-11 PF00467
PF00467   KOW
IPR006645 NGN (Domain)
 [2-88]  9.1e-10 SSF82679
SSF82679   N-utilization substance G protein NusG, N-terminal domain
 [2-86]  1.9e-25 SM00738
SM00738   no description
IPR006646 KOW (Kyrpides, Ouzounis, Woese) motif (Domain)
 [91-118]  1.1e-06 SM00739
SM00739   no description
IPR008991 Translation protein SH3-like (Domain)
 [92-151]  3.8e-08 SSF50104
SSF50104   Translation proteins SH3-like domain
IPR011590 Ribosomal protein L26e, archaeal (Family)
 [6-150]  1.1e-65 TIGR00405
TIGR00405   L26e_arch: ribosomal protein L24
SignalP No significant hit
TMHMM No significant hit
SOSUI 
 [118-140]  Transmembrane
Transmembrane 1   

close this sectionCalculated information (Amino acid sequence)

size of protein 152 amino acids
molecular mass 16,824.56 Da
pI 6.56
aa composition
AlaValLeuIlePheTrpProMetGlySer
6.6
(10aa)		11.8
(18aa)		5.9
(9aa)		11.2
(17aa)		3.3
(5aa)		0
(0aa)		6.6
(10aa)		0.7
(1aa)		8.6
(13aa)		5.3
(8aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
2.6
(4aa)		0
(0aa)		1.3
(2aa)		2
(3aa)		3.3
(5aa)		8.6
(13aa)		1.3
(2aa)		5.9
(9aa)		2.6
(4aa)		12.5
(19aa)

open this sectionSequence