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CDS Information : PH0002a

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Pyrococcus horikoshii OT3T (= NBRC 100139T) chromosome

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Overview 
Genome

close this sectionLocation

Organism Pyrococcus horikoshii OT3T (= NBRC 100139T)
Replicon chromosome
Start / Stop / Direction 1,281 / 1,096 / -
Location complement(1096..1281)
Type CDS
Length 186 bp (61 aa)

close this sectionAnnotation

Product preprotein translocase SecE subunit
Gene name
Functional category Genetic Information Processing
- Protein fate
EC number
Note
KEGG pathway
Sequence feature
References HAMAP:MF_00422
Uniprot:P35179 Pubmed:8223425
Uniprot:Q46493 Pubmed:9133659
Uniprot:P27340 Pubmed:1658539,7711082
Uniprot:Q57817 Pubmed:14661030

close this sectionComparative genome

Table
Display BBH1e-1001e-501e-101e-3
Pyrococcus abyssi GE5Pyrococcus furiosus DSM 3638Thermococcus kodakaraensis KOD1
[4] PAB3002 1e-15(73.6)
preprotein translocase subunit SecE(secE)
[2044] PF1989 2e-11(59.3)
preprotein translocase subunit SecE(secE)
[1420] TK1420 2e-09(52.8)
preprotein translocase subunit SecE(secE)

close this sectionRelated links to external database

UniProtP58199
RefSeqNP_142026.1
GI14591735
GeneID1443904
UniParcUPI000013579C

close this sectionComputational search results

BLASTP
Database:UniProtKB:12.5
1E=3e-27SECE_PYRHOPreprotein translocase subunit secE
Protein transport protein SEC61 gamma subunit homolog		Alignment
2E=8e-24SECE_PYRABPreprotein translocase subunit secE
Protein transport protein SEC61 gamma subunit homolog		Alignment
3E=9e-20SECE_PYRFUPreprotein translocase subunit secE
Protein transport protein SEC61 gamma subunit homolog		Alignment
4E=1e-14SECE_PYRKOPreprotein translocase subunit secE
Protein transport protein SEC61 gamma subunit homolog		Alignment
5E=2e-09SECE_METTHPreprotein translocase subunit secE
Protein transport protein SEC61 gamma subunit homolog		Alignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR001901 Protein secE/sec61-gamma protein (Family)
 [11-39]  8e-05 PS01067
PS01067   SECE_SEC61G
IPR008158 Protein translocase SEC61 complex gamma subunit (Family)
 [6-58]  4.7e-17 SSF103456
SSF103456   SSF103456
 [3-58]  7.79686138034983e-14 TIGR00327
TIGR00327   secE_euk_arch
SignalP No significant hit
TMHMM 
 [38-60]  Transmembrane (i-o)
Transmembrane 1   
SOSUI 
 [36-58]  Transmembrane
Transmembrane 1   

close this sectionCalculated information (Amino acid sequence)

size of protein 61 amino acids
molecular mass 6,921.46 Da
pI 10.93
aa composition
AlaValLeuIlePheTrpProMetGlySer
3.3
(2aa)		8.2
(5aa)		11.5
(7aa)		11.5
(7aa)		6.6
(4aa)		1.6
(1aa)		3.3
(2aa)		4.9
(3aa)		13.1
(8aa)		1.6
(1aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
3.3
(2aa)		0
(0aa)		1.6
(1aa)		1.6
(1aa)		1.6
(1aa)		11.5
(7aa)		0
(0aa)		6.6
(4aa)		0
(0aa)		8.2
(5aa)

open this sectionSequence