small fontnormal fontlarge fontmail to

CDS Information : PH0015

close allopen/close all

close this sectionGenomic map

Display

Pyrococcus horikoshii OT3T (= NBRC 100139T) chromosome

 Legend Jump
Overview 
Genome

close this sectionLocation

Organism Pyrococcus horikoshii OT3T (= NBRC 100139T)
Replicon chromosome
Start / Stop / Direction 13,692 / 12,298 / -
Location complement(12298..13692)
Type CDS
Length 1,395 bp (464 aa)

close this sectionAnnotation

Product L-aspartate oxidase
Gene name nadB
Functional category Metabolism
- Metabolism of Cofactors and Vitamins
EC number 1.4.3.16
Note
KEGG pathway
Sequence feature
References DOGAN:PH0015 Pubmed:12215812

close this sectionComparative genome

Table
Display BBH1e-1001e-501e-101e-3
Pyrococcus abyssi GE5Pyrococcus furiosus DSM 3638Thermococcus kodakaraensis KOD1
[18] PAB2343 0(768)
L-aspartate oxidase (EC:1.4.3.16)
[2029] PF1976 0(651)
L-aspartate oxidase (EC:1.4.3.16)
[297] TK0297 4e-170(590)
L-aspartate oxidase (EC:1.4.3.16)

close this sectionRelated links to external database

UniProtO57765
INSDBAA29083.1 (DDBJ GenBank EMBL)
RefSeqNP_142038.1
GI14589977
GeneID1443917
UniParcUPI000012FC87

close this sectionComputational search results

BLASTP
Database:UniProtKB:12.5
1E=0NADB_PYRHOL-aspartate oxidase
LASPO
Quinolinate synthetase B		Alignment
2E=0NADB_PYRABL-aspartate oxidase
LASPO
Quinolinate synthetase B		Alignment
3E=0NADB_PYRFUL-aspartate oxidase
LASPO
Quinolinate synthetase B		Alignment
4E=1e-175Q5JFX8_PYRKOQuinolinate synthetase BAlignment
5E=7e-78A7WHF3_9AQUIL-aspartate oxidaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I (Family)
 [5-27]  3.8e-06 PR00411 [169-178]  3.8e-06 PR00411 [327-334]  3.8e-06 PR00411
PR00411   PNDRDTASEI
IPR003953 Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (Domain)
 [5-349]  2.9999875044572e-64 PF00890
PF00890   FAD_binding_2
IPR004112 Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal (Domain)
 [376-463]  2.9e-18 SSF46977
SSF46977   Succ_DH_flav_C
 [424-448]  2.10000037262654e-05 PF02910
PF02910   Succ_DH_flav_C
IPR005288 L-aspartate oxidase (Family)
 [2-448]  TIGR00551
TIGR00551   nadB
IPR013027 FAD-dependent pyridine nucleotide-disulphide oxidoreductase (Domain)
 [5-27]  2.4e-06 PR00368 [327-334]  2.4e-06 PR00368
PR00368   FADPNR
SignalP 
 [1-23]  0.909 Signal
Eukaryota   
 [1-23]  0.923 Signal
Bacteria, Gram-positive   
 [1-23]  0.927 Signal
Bacteria, Gram-negative   
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 464 amino acids
molecular mass 51,295.83 Da
pI 6.97
aa composition
AlaValLeuIlePheTrpProMetGlySer
7.8
(36aa)		7.5
(35aa)		8.8
(41aa)		8.8
(41aa)		5.2
(24aa)		0.6
(3aa)		3
(14aa)		1.5
(7aa)		10.6
(49aa)		5.6
(26aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
3.9
(18aa)		0.4
(2aa)		4.1
(19aa)		0.6
(3aa)		3.2
(15aa)		5.8
(27aa)		2.6
(12aa)		6.7
(31aa)		4.7
(22aa)		8.4
(39aa)

open this sectionSequence