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CDS Information : PH0021

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close this sectionGenomic map

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Pyrococcus horikoshii OT3T (= NBRC 100139T) chromosome

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Overview 
Genome

close this sectionLocation

Organism Pyrococcus horikoshii OT3T (= NBRC 100139T)
Replicon chromosome
Start / Stop / Direction 20,608 / 18,773 / -
Location complement(18773..20608)
Type CDS
Length 1,836 bp (611 aa)

close this sectionAnnotation

Product anaerobic ribonucleoside triphosphate reductase
Gene name nrdD
Functional category Metabolism
- Nucleotide Metabolism
EC number
Note
KEGG pathway
Sequence feature

74 (a.a.)ACT_SITE
277 (a.a.)ACT_SITE
557 (a.a.)METAL
571 (a.a.)METAL
574 (a.a.)METAL
587 (a.a.)MOD_RES


References Uniprot:Q9ZER4 Pubmed:10438763

close this sectionComparative genome

Display BBH1e-1001e-501e-101e-3
Pyrococcus abyssi GE5Pyrococcus furiosus DSM 3638Thermococcus kodakaraensis KOD1
[26] PAB2337 0(1080)
anaerobic ribonucleoside triphosphate reductase (EC:1.17.4.2)
[2024] PF1971 0(1119)
anaerobic ribonucleoside triphosphate reductase (EC:1.17.4.2)
[2298] TK2298 0(1019)
anaerobic ribonucleoside triphosphate reductase (EC:1.17.4.2)

close this sectionRelated links to external database

UniProtO57759
INSDBAA29089.1 (DDBJ GenBank EMBL)
RefSeqNP_142043.1
GI14589982
GeneID1443922
UniParcUPI0000062CD2

close this sectionComputational search results

BLASTP
Database:UniProtKB:12.5
1E=0O57759_PYRHOPutative uncharacterized protein PH0021Alignment
2E=0Q8TZL9_PYRFUAnaerobic ribonucleoside-triphosphate reductaseAlignment
3E=0Q9V2Q2_PYRABNrdD anaerobic ribonucleoside triphosphate reductaseAlignment
4E=0Q5JDC0_PYRKOAnaerobic ribonucleoside-triphosphate reductaseAlignment
5E=0A3DNG8_STAMFAnaerobic ribonucleoside-triphosphate reductaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR012833 Ribonucleoside-triphosphate reductase, anaerobic (Domain)
 [19-609]  TIGR02487
TIGR02487   NrdD
IPR012833 Ribonucleoside-triphosphate reductase, anaerobic (Family)
 [19-609]  TIGR02487
TIGR02487   NrdD
IPR015826 Anaerobic ribonucleoside-triphosphate reductase class III, large subunit (Family)
 [2-611]  PIRSF000358
PIRSF000358   An_RNR_III_large
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 611 amino acids
molecular mass 70,450.91 Da
pI 6.9
aa composition
AlaValLeuIlePheTrpProMetGlySer
7.4
(45aa)
4.7
(29aa)
8.5
(52aa)
6.9
(42aa)
4.4
(27aa)
2.5
(15aa)
5.7
(35aa)
3.3
(20aa)
5.7
(35aa)
5.9
(36aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.9
(36aa)
1.1
(7aa)
3.9
(24aa)
1.5
(9aa)
5.7
(35aa)
6.4
(39aa)
1.8
(11aa)
5.9
(36aa)
4.3
(26aa)
8.5
(52aa)

open this sectionSequence