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CDS Information : PH0025

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close this sectionGenomic map

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Pyrococcus horikoshii OT3T (= NBRC 100139T) chromosome

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Overview 
Genome

close this sectionLocation

Organism Pyrococcus horikoshii OT3T (= NBRC 100139T)
Replicon chromosome
Start / Stop / Direction 24,924 / 23,644 / -
Location complement(23644..24924)
Type CDS
Length 1,281 bp (426 aa)

close this sectionAnnotation

Product ABC transporter substrate-binding protein precursor
Gene name
Functional category Membrane Transport
EC number
Note
KEGG pathway
Sequence feature
References Uniprot:P0AFK9 Pubmed:1939142

close this sectionComparative genome

Table
Display BBH1e-1001e-501e-101e-3
Pyrococcus abyssi GE5Pyrococcus furiosus DSM 3638Thermococcus kodakaraensis KOD1
[30] PAB2333 0(744)
putative trehalose/maltose binding protein or spermidine/putrescine-binding periplasmic
[2020] PF1967 0(721)
hypothetical protein

close this sectionRelated links to external database

UniProtO57755
INSDBAA29093.1 (DDBJ GenBank EMBL)
RefSeqNP_142047.1
GI14589986
GeneID1443926
UniParcUPI0000062CD3

close this sectionComputational search results

BLASTP
Database:UniProtKB:12.5
1E=0O57755_PYRHOPutative uncharacterized protein PH0025Alignment
2E=0Q9V2P8_PYRABPutative uncharacterized proteinAlignment
3E=0Q8TZM3_PYRFUPutative uncharacterized protein PF1967Alignment
4E=1e-160A2BJM2_HYPBUABC-type sugar transport system, periplasmic componentAlignment
5E=1e-151A3DLA2_STAMFExtracellular solute-binding protein, family 1Alignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR006059 Bacterial extracellular solute-binding protein, family 1 (Family)
 [6-330]  2.39999798157241e-35 PF01547
PF01547   SBP_bac_1
SignalP 
 [1-34]  1 Signal
Bacteria, Gram-positive   
 [1-20]  0.703 Signal
Eukaryota   
TMHMM 
 [7-29]  Transmembrane (i-o)
Transmembrane 1   
SOSUI 
 [3-25]  Transmembrane
Transmembrane 1   

close this sectionCalculated information (Amino acid sequence)

size of protein 426 amino acids
molecular mass 47,160.61 Da
pI 7.16
aa composition
AlaValLeuIlePheTrpProMetGlySer
8
(34aa)		8.2
(35aa)		8.9
(38aa)		5.9
(25aa)		4.5
(19aa)		2.3
(10aa)		6.6
(28aa)		2.3
(10aa)		9.4
(40aa)		3.8
(16aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.4
(23aa)		0.2
(1aa)		3.1
(13aa)		2.6
(11aa)		3.8
(16aa)		9.4
(40aa)		1.4
(6aa)		2.3
(10aa)		4.5
(19aa)		7.5
(32aa)

open this sectionSequence