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CDS Information : PH0025a

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close this sectionGenomic map

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Pyrococcus horikoshii OT3T (= NBRC 100139T) chromosome

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Overview 
Genome

close this sectionLocation

Organism Pyrococcus horikoshii OT3T (= NBRC 100139T)
Replicon chromosome
Start / Stop / Direction 26,382 / 26,107 / -
Location complement(26107..26382)
Type CDS
Length 276 bp (91 aa)

close this sectionAnnotation

Product elongation factor 1-beta
Gene name
Functional category Genetic Information Processing
- Translation
EC number
Note
KEGG pathway
Sequence feature
References HAMAP:MF_00043
Uniprot:O27734 Pubmed:10959626
Uniprot:Q64214 Pubmed:7632739,8652615

close this sectionComparative genome

Table
Display BBH1e-1001e-501e-101e-3
Pyrococcus abyssi GE5Pyrococcus furiosus DSM 3638Thermococcus kodakaraensis KOD1
[32] PAB3009 1e-32(129)
elongation factor 1-beta(ef1B)
[2018] PF1965 3e-33(131)
elongation factor 1-beta(ef1B)
[112] TK0112 9e-34(133)
elongation factor 1-beta(ef1B)

close this sectionRelated links to external database

UniProtP58748
RefSeqNP_142049.1
GI14591737
GeneID1443928
UniParcUPI0000129C40

close this sectionComputational search results

BLASTP
Database:UniProtKB:12.5
1E=4e-44EF1B_PYRHOElongation factor 1-beta
EF-1-beta
aEF-1beta		Alignment
2E=4e-41EF1B_PYRABElongation factor 1-beta
EF-1-beta
aEF-1beta		Alignment
3E=5e-41EF1B_PYRFUElongation factor 1-beta
EF-1-beta
aEF-1beta		Alignment
4E=2e-40EF1B_PYRKOElongation factor 1-beta
EF-1-beta
aEF-1beta		Alignment
5E=5e-12A2BMH3_HYPBUElongation factor 1-betaAlignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR001326 Elongation factor 1, beta/beta'/delta chain (Domain)
 [1-91]  1.59999889349247e-16 PF00736
PF00736   EF1_GNE
IPR001326 Elongation factor 1, beta/beta'/delta chain (Family)
 [1-91]  1.59999889349247e-16 PF00736
PF00736   EF1_GNE
IPR004542 Translation elongation factor aEF-1 beta (Family)
 [1-91]  7.43566653029075e-20 TIGR00489
TIGR00489   aEF-1_beta
IPR014038 Translation elongation factor EF1B, beta and delta chains, guanine nucleotide exchange (Domain)
 [1-91]  1.2e-20 SSF54984
SSF54984   SSF54984
IPR014717 Translation elongation factor EF1B/ribosomal protein S6, conserved (Domain)
 [3-90]  7.60000011115791e-22 G3DSA:3.30.70.60
G3DSA:3.30.70.60   Transl_elong_EF1B/rib_con
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 91 amino acids
molecular mass 10,352.75 Da
pI 4.07
aa composition
AlaValLeuIlePheTrpProMetGlySer
5.5
(5aa)		14.3
(13aa)		8.8
(8aa)		4.4
(4aa)		5.5
(5aa)		0
(0aa)		4.4
(4aa)		2.2
(2aa)		5.5
(5aa)		4.4
(4aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
2.2
(2aa)		0
(0aa)		3.3
(3aa)		0
(0aa)		3.3
(3aa)		7.7
(7aa)		0
(0aa)		4.4
(4aa)		6.6
(6aa)		17.6
(16aa)

open this sectionSequence