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CDS Information : PH0026a

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Pyrococcus horikoshii OT3T (= NBRC 100139T) chromosome

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Overview 
Genome

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Organism Pyrococcus horikoshii OT3T (= NBRC 100139T)
Replicon chromosome
Start / Stop / Direction 26,583 / 26,383 / -
Location complement(26383..26583)
Type CDS
Length 201 bp (66 aa)

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Product conserved hypothetical protein
Gene name
Functional category Unclassified
- Similar to unknown protein
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionComparative genome

Table
Display BBH1e-1001e-501e-101e-3
Pyrococcus abyssi GE5Pyrococcus furiosus DSM 3638Thermococcus kodakaraensis KOD1
[33] PAB0018a 5e-37(144)
Zn-ribbon RNA-binding protein involved in translation
[2017] PF1964 7e-34(134)
hypothetical protein
[111] TK0111 5e-33(131)
zinc-ribbon RNA-binding protein involved in translation

close this sectionRelated links to external database

RefSeqNP_142050.1 : N-term changed (-9)
GI14591736 : N-term changed (-9)
GeneID1443929 : N-term changed (-9)

close this sectionComputational search results

BLASTP
Database:UniProtKB:12.5
1E=3e-36Q8J2Y5_PYRABPredicted Zn-ribbon RNA-binding protein involved in translationAlignment
2E=2e-30Q8TZM6_PYRFUPutative uncharacterized protein PF1964Alignment
3E=1e-29Q5JFE2_PYRKOPredicted zinc-ribbon RNA-binding protein involved in translationAlignment
4E=3e-16A2BMG9_HYPBUPredicted Zn-ribbon RNA-binding proteinAlignment
5E=6e-16A8A9T9_IGNH4Putative uncharacterized proteinAlignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR011668 Protein of unknown function DUF1610 (Domain)
 [17-40]  1.8e-12 PF07754 [46-63]  3.2e-06 PF07754
PF07754   DUF1610
IPR015797 NUDIX (Domain)
 [17-44]  0.0038 SSF55811
SSF55811   Nudix
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 66 amino acids
molecular mass 7,595.93 Da
pI 7.15
aa composition
AlaValLeuIlePheTrpProMetGlySer
6.1
(4aa)		4.5
(3aa)		6.1
(4aa)		6.1
(4aa)		3
(2aa)		4.5
(3aa)		9.1
(6aa)		1.5
(1aa)		6.1
(4aa)		1.5
(1aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.1
(4aa)		12.1
(8aa)		1.5
(1aa)		0
(0aa)		1.5
(1aa)		7.6
(5aa)		3
(2aa)		6.1
(4aa)		0
(0aa)		13.6
(9aa)

open this sectionSequence