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CDS Information : PH0032

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close this sectionGenomic map

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Pyrococcus horikoshii OT3T (= NBRC 100139T) chromosome

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Overview 
Genome

close this sectionLocation

Organism Pyrococcus horikoshii OT3T (= NBRC 100139T)
Replicon chromosome
Start / Stop / Direction 31,690 / 30,578 / -
Location complement(30578..31690)
Type CDS
Length 1,113 bp (370 aa)

close this sectionAnnotation

Product ClcA homolog
Gene name
Functional category Other functions
- Miscellaneous
EC number
Note
KEGG pathway
Sequence feature
References HAMAP:MF_01128
Uniprot:P37019 Pubmed:10539975,10648805,12384697,14985752

close this sectionComparative genome

Table
Display BBH1e-1001e-501e-101e-3
Pyrococcus abyssi GE5Pyrococcus furiosus DSM 3638Thermococcus kodakaraensis KOD1
[550] PAB2010 2e-47(181)
hypothetical protein

close this sectionRelated links to external database

UniProtO57747
INSDBAA29100.1 (DDBJ GenBank EMBL)
RefSeqNP_142054.1
GI14589991
GeneID1443934
UniParcUPI0000062CD8

close this sectionComputational search results

BLASTP
Database:UniProtKB:12.5
1E=0O57747_PYRHOPutative uncharacterized protein PH0032Alignment
2E=2e-68Q9V1A3_PYRABEriC voltage gated chloride channelAlignment
3E=4e-44A8F4B4_9THEMChloride channel coreAlignment
4E=2e-41A7HL32_9THEMChloride channel coreAlignment
5E=5e-41A6LXJ9_CLOBEChloride channel, coreAlignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR001807 Cl- channel, voltage gated (Domain)
 [48-367]  5.39997012872503e-97 PF00654
PF00654   Voltage_CLC
IPR001807 Cl- channel, voltage gated (Family)
 [1-364]  2.10000267834025e-28 PTHR11689
PTHR11689   Cl-channel_volt
 [48-367]  5.39997012872503e-97 PF00654
PF00654   Voltage_CLC
IPR014743 Chloride channel, core (Domain)
 [1-368]  1.30000495407324e-57 G3DSA:1.10.3080.10
G3DSA:1.10.3080.10   G3DSA:1.10.3080.10
 [2-363]  6.9e-58 SSF81340
SSF81340   SSF81340
SignalP 
 [1-17]  0.916 Signal
Eukaryota   
TMHMM 
 [4-26]  Transmembrane (o-i) [42-61]  Transmembrane (i-o) [66-83]  Transmembrane (o-i) [90-109]  Transmembrane (i-o) [129-151]  Transmembrane (o-i) [163-185]  Transmembrane (i-o) [200-222]  Transmembrane (o-i) [235-254]  Transmembrane (i-o) [258-280]  Transmembrane (o-i) [293-312]  Transmembrane (i-o) [342-364]  Transmembrane (o-i)
Transmembrane 11   
SOSUI 
 [7-29]  Transmembrane [40-61]  Transmembrane [87-109]  Transmembrane [126-148]  Transmembrane [162-184]  Transmembrane [201-223]  Transmembrane [236-258]  Transmembrane [266-288]  Transmembrane [302-324]  Transmembrane [346-368]  Transmembrane
Transmembrane 10   

close this sectionCalculated information (Amino acid sequence)

size of protein 370 amino acids
molecular mass 40,162.13 Da
pI 10.26
aa composition
AlaValLeuIlePheTrpProMetGlySer
6.5
(24aa)		9.2
(34aa)		19.5
(72aa)		8.9
(33aa)		6.8
(25aa)		1.1
(4aa)		4.9
(18aa)		3.2
(12aa)		9.5
(35aa)		7.6
(28aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.3
(16aa)		0.5
(2aa)		0.5
(2aa)		1.1
(4aa)		3.2
(12aa)		5.9
(22aa)		0.5
(2aa)		2.4
(9aa)		1.6
(6aa)		2.7
(10aa)

open this sectionSequence