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CDS Information : PH0039a

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Pyrococcus horikoshii OT3T (= NBRC 100139T) chromosome

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Overview 
Genome

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Organism Pyrococcus horikoshii OT3T (= NBRC 100139T)
Replicon chromosome
Start / Stop / Direction 37,724 / 37,437 / -
Location complement(37437..37724)
Type CDS
Length 288 bp (95 aa)

close this sectionAnnotation

Product DNA-directed RNA polymerase subunit L
Gene name rpoL
Functional category Genetic Information Processing
- Transcription
EC number 2.7.7.6
Note
KEGG pathway
Sequence feature
References HAMAP:MF_00261
Uniprot:P38902 Pubmed:8508029
Uniprot:O08740 Pubmed:9099876

close this sectionComparative genome

Table
Display BBH1e-1001e-501e-101e-3
Pyrococcus abyssi GE5Pyrococcus furiosus DSM 3638Thermococcus kodakaraensis KOD1
[58] PAB2316 1e-46(176)
DNA-directed RNA polymerase subunit L(rpoL)
[50] PF0050 4e-45(171)
DNA-directed RNA polymerase subunit L
[1167] TK1167 5e-40(154)
DNA-directed RNA polymerase subunit L

close this sectionRelated links to external database

UniProtP57671
RefSeqNP_142060.1
GI14591738
GeneID1443940
UniParcUPI00001347B8

close this sectionComputational search results

BLASTP
Database:UniProtKB:12.5
1E=1e-47RPOL_PYRHODNA-directed RNA polymerase subunit LAlignment
2E=3e-43RPOL_PYRABDNA-directed RNA polymerase subunit LAlignment
3E=1e-41RPOL_PYRFUDNA-directed RNA polymerase subunit LAlignment
4E=1e-36RPOL_PYRKODNA-directed RNA polymerase subunit LAlignment
5E=4e-10RPOL_SULACDNA-directed RNA polymerase subunit LAlignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR008193 DNA-directed RNA polymerase, 13 to 16 kDa subunit (Conserved_site)
 [17-48]  8e-05 PS01154
PS01154   RNA_POL_L_13KD
IPR008193 DNA-directed RNA polymerase, 13 to 16 kDa subunit (Family)
 [17-48]  8e-05 PS01154
PS01154   RNA_POL_L_13KD
IPR009025 RNA polymerase, RBP11-like (Domain)
 [1-94]  2.9e-22 SSF55257
SSF55257   RNAP_RBP11-like
IPR011261 RNA polymerase, dimerisation (Domain)
 [9-87]  1.89999859865843e-12 PF01193
PF01193   RNA_pol_L
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 95 amino acids
molecular mass 11,143.92 Da
pI 6.27
aa composition
AlaValLeuIlePheTrpProMetGlySer
8.4
(8aa)		10.5
(10aa)		7.4
(7aa)		5.3
(5aa)		5.3
(5aa)		1.1
(1aa)		4.2
(4aa)		3.2
(3aa)		2.1
(2aa)		1.1
(1aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.3
(6aa)		0
(0aa)		2.1
(2aa)		0
(0aa)		2.1
(2aa)		11.6
(11aa)		3.2
(3aa)		6.3
(6aa)		5.3
(5aa)		14.7
(14aa)

open this sectionSequence