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CDS Information : PH0052

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close this sectionGenomic map

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Pyrococcus horikoshii OT3T (= NBRC 100139T) chromosome

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Overview 
Genome

close this sectionLocation

Organism Pyrococcus horikoshii OT3T (= NBRC 100139T)
Replicon chromosome
Start / Stop / Direction 46,259 / 45,576 / -
Location complement(45576..46259)
Type CDS
Length 684 bp (227 aa)

close this sectionAnnotation

Product rRNA/tRNA 2'-O-methyltransferase
Gene name
Functional category Genetic Information Processing
- RNA modification
EC number
Note
KEGG pathway
Sequence feature
References HAMAP:MF_00351
Uniprot:P58032 Pubmed:11959980
Uniprot:Q58108 Pubmed:10089444,10654930
Uniprot:O28192 Pubmed:12598892
Uniprot:Q9P9M0 Pubmed:10775111
DOGAN:PH0052 Pubmed:16984968
Uniprot:Q9V2L5 Pubmed:14602911
Uniprot:Q8U4M2 Pubmed:14975761

close this sectionComparative genome

Table
Display BBH1e-1001e-501e-101e-3
Pyrococcus abyssi GE5Pyrococcus furiosus DSM 3638Thermococcus kodakaraensis KOD1
[67] PAB2306 2e-126(443)
fibrillarin
[59] PF0059 2e-124(436)
fibrillarin
[183] TK0183 5e-118(415)
fibrillarin

close this sectionRelated links to external database

UniProtO57811
INSDBAA29120.1 (DDBJ GenBank EMBL)
RefSeqNP_142069.1
GI14590005
GeneID1443949
UniParcUPI000012AA25

close this sectionComputational search results

BLASTP
Database:UniProtKB:12.5
1E=1e-126FLPA_PYRHOFibrillarin-like rRNA/tRNA 2'-O-methyltransferaseAlignment
2E=1e-123FLPA_PYRABFibrillarin-like rRNA/tRNA 2'-O-methyltransferaseAlignment
3E=1e-121FLPA_PYRFUFibrillarin-like rRNA/tRNA 2'-O-methyltransferaseAlignment
4E=1e-115FLPA_PYRKOFibrillarin-like rRNA/tRNA 2'-O-methyltransferaseAlignment
5E=1e-69A8ACE1_IGNH4rRNA 2'-O-methyltransferase fibrillarinAlignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR000692 Fibrillarin (Conserved_site)
 [99-113]  8e-05 PS00566
PS00566   FIBRILLARIN
IPR000692 Fibrillarin (Family)
 [1-223]  2.5999823391029e-84 PTHR10335
PTHR10335   Fibrillarin
 [24-43]  4e-78 PR00052 [47-66]  4e-78 PR00052 [74-95]  4e-78 PR00052 [99-116]  4e-78 PR00052 [124-153]  4e-78 PR00052 [154-183]  4e-78 PR00052 [205-226]  4e-78 PR00052
PR00052   FIBRILLARIN
 [9-223]  PD004637
PD004637   Fibrillarin
 [1-226]  1.39999277195138e-128 PIRSF006540
PIRSF006540   Nop17p
 [99-113]  8e-05 PS00566
PS00566   FIBRILLARIN
 [1-227]  1.19999063421838e-110 PF01269
PF01269   Fibrillarin
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 227 amino acids
molecular mass 25,827.75 Da
pI 6.82
aa composition
AlaValLeuIlePheTrpProMetGlySer
5.3
(12aa)		11.5
(26aa)		6.6
(15aa)		8.4
(19aa)		3.5
(8aa)		1.3
(3aa)		5.7
(13aa)		1.3
(3aa)		7.5
(17aa)		4.4
(10aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
3.5
(8aa)		0
(0aa)		3.5
(8aa)		1.8
(4aa)		4
(9aa)		7.9
(18aa)		1.3
(3aa)		7
(16aa)		4.4
(10aa)		11
(25aa)

open this sectionSequence