small fontnormal fontlarge fontmail to

CDS Information : PH2000

close allopen/close all

close this sectionGenomic map

Display

Pyrococcus horikoshii OT3T (= NBRC 100139T) chromosome

 Legend Jump
Overview 
Genome

close this sectionLocation

Organism Pyrococcus horikoshii OT3T (= NBRC 100139T)
Replicon chromosome
Start / Stop / Direction 61 / 1,737,908 / -
Location complement(join(1737908..1738506, 1..61))
Type CDS
Length 660 bp (219 aa)

close this sectionAnnotation

Product 50S ribosomal protein L1P
Gene name rpl1p
Functional category Genetic Information Processing
- Translation
EC number
Note
KEGG pathway
Sequence feature
References HAMAP:MF_01318
Uniprot:P54050 Pubmed:10801481
DOGAN:PH2000 Pubmed:16594895

close this sectionComparative genome

Table
Display BBH1e-1001e-501e-101e-3
Pyrococcus abyssi GE5Pyrococcus furiosus DSM 3638Thermococcus kodakaraensis KOD1
[1] PAB1166 7e-98(348)
50S ribosomal protein L1P(rpl1P)
[2047] PF1992 1e-95(341)
50S ribosomal protein L1P(rpl1P)
[1417] TK1417 7e-91(325)
50S ribosomal protein L1P(rpl1P)

close this sectionRelated links to external database

UniProtO57782
INSDBAA31942.1 (DDBJ GenBank EMBL)
RefSeqNP_877946.1
GI33359445
GeneID1442843
UniParcUPI0000133CF4

close this sectionComputational search results

BLASTP
Database:UniProtKB:12.5
1E=1e-117RL1_PYRHO50S ribosomal protein L1PAlignment
2E=1e-111RL1_PYRAB50S ribosomal protein L1PAlignment
3E=1e-109RL1_PYRFU50S ribosomal protein L1PAlignment
4E=1e-104RL1_PYRKO50S ribosomal protein L1PAlignment
5E=9e-68Q4U5W3_METIGRibosomal protein L1Alignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR002143 Ribosomal protein L1 (Family)
 [7-218]  PD001314
PD001314   Ribosomal_L1
 [117-136]  8e-05 PS01199
PS01199   RIBOSOMAL_L1
 [6-214]  1.40000506907309e-62 PF00687
PF00687   Ribosomal_L1
 [6-218]  9.8e-71 SSF56808
SSF56808   SSF56808
IPR005878 Ribosomal protein L1, bacterial and chloroplast form (Family)
 [10-218]  1.10000150671643e-34 PTHR23105:SF5
PTHR23105:SF5   Ribosom_L1_bac
IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich (Domain)
 [6-218]  7.79998304125632e-39 G3DSA:3.30.190.20
G3DSA:3.30.190.20   G3DSA:3.30.190.20
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 219 amino acids
molecular mass 24,398.62 Da
pI 10.55
aa composition
AlaValLeuIlePheTrpProMetGlySer
10.5
(23aa)		11
(24aa)		7.3
(16aa)		6.8
(15aa)		2.3
(5aa)		0
(0aa)		6.4
(14aa)		3.2
(7aa)		5.5
(12aa)		3.2
(7aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
3.2
(7aa)		0
(0aa)		4.1
(9aa)		2.7
(6aa)		1.8
(4aa)		10
(22aa)		0.9
(2aa)		8.2
(18aa)		4.1
(9aa)		8.7
(19aa)

open this sectionSequence