CDS Information : RER_00070

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Rhodococcus erythropolis PR4 (= NBRC 100887) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Rhodococcus erythropolis PR4 (= NBRC 100887)
Replicon	chromosome
Start / Stop / Direction	8,055 / 8,978 / +
Location	8055..8978
Type	CDS
Length	924 bp (307 aa)

Product	putative oxidoreductase
Gene name
Functional category	Unclassified - putative function (general)
EC number
Note
KEGG pathway
Sequence feature
References	Uniprot:Q52186 Pubmed:7710319 Uniprot:O05617 Pubmed:9098058 Uniprot:P33164 Pubmed:1280857

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=1e-147 Q0SAG1_RHOSR Probable phthalate 4,5-dioxygenase Alignment 2 E=1e-96 A4FFK5_SACEN Probable phthalate 4,5-dioxygenase Alignment 3 E=2e-94 Q82RI7_STRAW Putative iron-sulfur oxidoreductase Alignment 4 E=3e-91 B1MEC4_MYCAB Putative oxidoreductase Alignment 5 E=4e-89 Q0S0Q8_RHOSR Probable iron-sulfur oxidoreductase Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR001041 Ferredoxin (Domain) SSF54292   2Fe-2S ferredoxin-like PF00111   Fer2 PS51085   2FE2S_FER_2 IPR001433 Oxidoreductase FAD/NAD(P)-binding (Domain) PF00175   NAD_binding_1 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site (Binding_site) PS00197   2FE2S_FER_1 IPR008333 Oxidoreductase FAD-binding region (Domain) PF00970   FAD_binding_6 IPR012675 Beta-grasp fold, ferredoxin-type (Domain) G3DSA:3.10.20.30   no description IPR017927 Ferredoxin reductase-type FAD-binding domain (Domain) PS51384   FAD_FR IPR017938 Riboflavin synthase-like beta-barrel (Domain) SSF63380   Riboflavin synthase domain-like
SignalP	No significant hit
TMHMM	Transmembrane 1
SOSUI	No significant hit

size of protein	307 amino acids
molecular mass	33,398.95 Da
pI	5.41
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 6.5 (20aa) 9.8 (30aa) 7.8 (24aa) 3.6 (11aa) 4.6 (14aa) 1 (3aa) 7.8 (24aa) 2.6 (8aa) 11.4 (35aa) 6.2 (19aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.2 (16aa) 2.3 (7aa) 1.3 (4aa) 2.3 (7aa) 2 (6aa) 1.6 (5aa) 2.3 (7aa) 8.8 (27aa) 6.5 (20aa) 6.5 (20aa)

>RER_00070 putative oxidoreductase
ATGAACATGGTGGTCAGTACGCGTGAGGTGGTGGCGACCGACGAGAACGTCGTTCGCCTG
CGCTTCGAATCCGCCGACGGTTCACCGATTCCGCCGTGGCATCCGGGTTCGCACCTGGAC
TTCCATCTACCTTCGGGTCTGCGGCGTCAGTATTCGCTGTGCGGCGACCCTGCCGATCGC
ACGGGATACAGCGTCGCGGTTCGTCGGATCCCCGACGGCGGTGGCGGTTCCATCGAGATG
CACGCTCTCCAGCCGGGTGAGCACGTCACGGTACGCGGCCCTCGCAACGGATTTCCCTTT
GTGGGTGAAGGCAGTGCACTGTTTGTTGCCGGCGGTATCGGTATCACACCGATCATCGCA
ATGGTCCGTGCGGCAAGAGAATTGGGAATGGACTGGTACTTCGTGTACTCGGGCCGCTCT
CGTGAATCCATGCCGTTCCTCGACGAGATCGCGAGCTGGGAACCCGAGCGTGTCTTCGTG
CGCCCGGACGACGAGTTCGGATTACCCACCACCGCAGACCTTCTCGGACGAGCGCCGGTC
GGCGGCGCCGTGTACTGCTGCGGCCCGACGCCGATGCTCGACGCCGTTCGCCGCGGATTC
CGCGATACACCCTCCACCGCTTTGCATTTCGAGCGGTTCGGGGCTCCGCCGGTGATCGAC
GGCAAGGAATTCGAAGTGCAGCTTGTCAATTCGGGCCAGGTGCTCACCGTGCCCGCCGAC
GAGTCCGCGCTCGACGTCATCAAGAAGACATTGCCCGGTGTCGGGTACTCGTGTCAGCAG
GGTTTCTGCGGAACCTGTCGTGTGAAGGTACTCGCGGGCAAGCCCGATCACCGCGAAAGG
CGTCTGACCGACACCGAACAGGAAACGGAGATGCTCATCTGCGTATCCCGTTCCGACGGT
GGACGTCTCGTTCTCGATCTCTAG


>RER_00070 putative oxidoreductase
MNMVVSTREVVATDENVVRLRFESADGSPIPPWHPGSHLDFHLPSGLRRQYSLCGDPADR
TGYSVAVRRIPDGGGGSIEMHALQPGEHVTVRGPRNGFPFVGEGSALFVAGGIGITPIIA
MVRAARELGMDWYFVYSGRSRESMPFLDEIASWEPERVFVRPDDEFGLPTTADLLGRAPV
GGAVYCCGPTPMLDAVRRGFRDTPSTALHFERFGAPPVIDGKEFEVQLVNSGQVLTVPAD
ESALDVIKKTLPGVGYSCQQGFCGTCRVKVLAGKPDHRERRLTDTEQETEMLICVSRSDG
GRLVLDL

NBRC No.	clone name	start	stop	length(bp)
G12-001-001	REGR1S8006A03	998	41,244	40,247
G12-001-255	REGR1S7004B04	6,498,939	21,873	39,245

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.