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CDS Information : RER_00090

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close this sectionGenomic map

Display Clone

Rhodococcus erythropolis PR4 (= NBRC 100887) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Rhodococcus erythropolis PR4 (= NBRC 100887)
Replicon chromosome
Start / Stop / Direction 10,128 / 12,164 / +
Location 10128..12164
Type CDS
Length 2,037 bp (678 aa)

close this sectionAnnotation

Product DNA gyrase subunit B
Gene name gyrB
Functional category Genetic Information Processing
- Replication and Repair
EC number 5.99.1.3
Note May form a complex with the subunit A (encoded by RER_00100).
KEGG pathway
Sequence feature
References Uniprot:P0C559 Pubmed:8574396,8878580

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0Q0SAF9_RHOSRDNA topoisomerase subunit BAlignment
2E=0Q0X0C5_COREQDNA gyrase subunit BAlignment
3E=0Q5Z3Z3_NOCFAPutative DNA gyrase B subunitAlignment
4E=0B1ME45_MYCABDNA gyrase (Subunit B) GyrB
DNA topoisomerase		Alignment
5E=0GYRB_MYCTADNA gyrase subunit BAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR001241 DNA topoisomerase, type IIA, subunit B or N-terminal (Domain)
 [459-467]  PS00177
PS00177   TOPOISOMERASE_II
 [44-671]  SM00433
SM00433   no description
 [34-677]  PTHR10169
PTHR10169   DNA TOPOISOMERASE/GYRASE
IPR001241 DNA topoisomerase, type IIA (Family)
 [44-671]  SM00433
SM00433   no description
IPR002288 DNA topoisomerase, type IIA, subunit B, C-terminal (Domain)
 [601-667]  6.7e-43 PF00986
PF00986   DNA_gyraseB_C
IPR003594 ATP-binding region, ATPase-like (Domain)
 [14-225]  3.2e-70 SSF55874
SSF55874   ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
 [40-181]  3.3e-30 PF02518
PF02518   HATPase_c
 [12-226]  8.3e-77 G3DSA:3.30.565.10
G3DSA:3.30.565.10   no description
 [40-182]  4.4e-27 SM00387
SM00387   no description
IPR006171 TOPRIM (Domain)
 [455-566]  1e-10 PF01751
PF01751   Toprim
IPR011557 DNA gyrase, subunit B (Family)
 [15-678]  TIGR01059
TIGR01059   gyrB: DNA gyrase, B subunit
IPR011558 DNA topoisomerase, type IIA, subunit B, conserved region (Domain)
 [462-573]  2e-49 PD149633
PD149633   GYRB_MYCPA_Q9L7L3;
IPR013506 DNA topoisomerase, type IIA, subunit B, region 2 (Domain)
 [258-428]  4.7e-93 PF00204
PF00204   DNA_gyraseB
IPR013759 DNA topoisomerase, type IIA, subunit B or N-terminal, alpha-beta (Domain)
 [421-635]  1.8e-73 G3DSA:3.40.50.670
G3DSA:3.40.50.670   no description
IPR013760 DNA topoisomerase, type IIA, central (Domain)
 [431-673]  6.2e-87 SSF56719
SSF56719   Type II DNA topoisomerase
IPR018522 DNA topoisomerase, type IIA, conserved site (Conserved_site)
 [459-467]  PS00177
PS00177   TOPOISOMERASE_II
IPR020568 Ribosomal protein S5 domain 2-type fold (Domain)
 [258-429]  1.1e-62 SSF54211
SSF54211   Ribosomal protein S5 domain 2-like
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 678 amino acids
molecular mass 74,397.95 Da
pI 6.23
aa composition
AlaValLeuIlePheTrpProMetGlySer
10.2
(69aa)		8
(54aa)		7.8
(53aa)		5
(34aa)		2.8
(19aa)		1
(7aa)		3.1
(21aa)		1.9
(13aa)		8.3
(56aa)		5.8
(39aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.9
(47aa)		0.3
(2aa)		3.1
(21aa)		2.8
(19aa)		2.7
(18aa)		7.1
(48aa)		2.8
(19aa)		5.8
(39aa)		6.8
(46aa)		8
(54aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G12-001-001 REGR1S8006A03 998 41,244 40,247
G12-001-255 REGR1S7004B04 6,498,939 21,873 39,245

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.