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CDS Information : RER_04580

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close this sectionGenomic map

Display Clone

Rhodococcus erythropolis PR4 (= NBRC 100887) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Rhodococcus erythropolis PR4 (= NBRC 100887)
Replicon chromosome
Start / Stop / Direction 510,297 / 511,853 / +
Location 510297..511853
Type CDS
Length 1,557 bp (518 aa)

close this sectionAnnotation

Product probable fatty-acid--CoA ligase
Synonym: acyl-CoA synthetase
Gene name fadD
Functional category Metabolism
- Lipid Metabolism
EC number 6.2.1.-
Note Similar to the long-chain fatty acyl-CoA ligase FadD19 (Rv3515c) of Mycobacterium tuberculosis (Q7D5D8).
KEGG pathway map:00640 KO:K01913
map:00903 KO:K01913
map:00642 KO:K01913
Sequence feature
References Uniprot:Q7D5D8 Pubmed:15042094
Uniprot:O33855 Pubmed:11690636

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=1e-132B1VN35_STRGGPutative acyl-CoA synthetaseAlignment
2E=1e-132Q9EXL2_STRGRFadDAlignment
3E=1e-129Q93GX4_STRAWFadD-like protein
Putative acyl-CoA synthetase, long-chain fatty acid:CoA ligase
Alignment
4E=1e-127A1TFN6_MYCVPAMP-dependent synthetase and ligaseAlignment
5E=1e-126B1MIL5_MYCABProbable fatty-acid-CoA ligase FadDAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR000873 AMP-dependent synthetase and ligase (Domain)
 [157-168]  PS00455
PS00455   AMP_BINDING
 [30-445]  2.8e-71 PF00501
PF00501   AMP-binding
IPR020845 AMP-binding, conserved site (Conserved_site)
 [157-168]  PS00455
PS00455   AMP_BINDING
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 518 amino acids
molecular mass 55,652.58 Da
pI 4.76
aa composition
AlaValLeuIlePheTrpProMetGlySer
11.8
(61aa)
9.8
(51aa)
9.7
(50aa)
5.6
(29aa)
3.9
(20aa)
0.4
(2aa)
6
(31aa)
2.1
(11aa)
8.3
(43aa)
5.2
(27aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.2
(27aa)
1
(5aa)
3.3
(17aa)
1.4
(7aa)
2.5
(13aa)
2.5
(13aa)
2.3
(12aa)
6.2
(32aa)
6
(31aa)
6.9
(36aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G12-001-020 REGR1S8012D01 480,893 517,218 36,326
G12-001-021 REGR1S7002F03 502,408 545,652 43,245

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.