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CDS Information : RER_09720

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close this sectionGenomic map

Display Clone

Rhodococcus erythropolis PR4 (= NBRC 100887) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Rhodococcus erythropolis PR4 (= NBRC 100887)
Replicon chromosome
Start / Stop / Direction 1,070,257 / 1,069,322 / -
Location complement(1069322..1070257)
Type CDS
Length 936 bp (311 aa)

close this sectionAnnotation

Product putative formyltransferase
Gene name
Functional category Unclassified
- putative function (general)
EC number 2.1.2.-
Note
KEGG pathway
Sequence feature
References Uniprot:Q50378 Pubmed:7885234
Uniprot:O85732 Pubmed:10499278

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=1e-158Q0S7I8_RHOSRMethionyl-tRNA formyltransferaseAlignment
2E=1e-123B1VMR3_STRGGPutative formyltransferaseAlignment
3E=1e-123A0ACR4_STRAMPutative formyltransferaseAlignment
4E=1e-119Q9RK07_STRCOPutative formyltransferaseAlignment
5E=1e-118A4FD48_SACENMethionyl-tRNA formyltransferaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR002376 Formyl transferase, N-terminal (Domain)
 [1-178]  9.8e-29 PF00551
PF00551   Formyl_trans_N
 [1-203]  2.4e-53 G3DSA:3.40.50.170
G3DSA:3.40.50.170   no description
 [1-206]  3.6e-56 SSF53328
SSF53328   Formyltransferase
IPR005793 Formyl transferase, C-terminal (Domain)
 [204-305]  1.3e-15 G3DSA:3.10.25.10
G3DSA:3.10.25.10   no description
 [203-310]  9.7e-20 PF02911
PF02911   Formyl_trans_C
IPR011034 Formyl transferase, C-terminal-like (Domain)
 [202-304]  4.7e-19 SSF50486
SSF50486   FMT C-terminal domain-like
IPR015518 Methionine tRNA Formyltransferase-like (Family)
 [65-246]  8.1e-45 PTHR11138
PTHR11138   METHIONYL-TRNA FORMYLTRANSFERASE
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 311 amino acids
molecular mass 34,483.65 Da
pI 4.87
aa composition
AlaValLeuIlePheTrpProMetGlySer
10.6
(33aa)
7.1
(22aa)
7.7
(24aa)
5.8
(18aa)
3.9
(12aa)
2.9
(9aa)
5.8
(18aa)
1.6
(5aa)
7.7
(24aa)
4.8
(15aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.8
(21aa)
0
(0aa)
2.6
(8aa)
2.9
(9aa)
2.6
(8aa)
3.2
(10aa)
3.9
(12aa)
5.8
(18aa)
8.7
(27aa)
5.8
(18aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G12-001-042 REGR1S7013A02 1,033,679 1,075,766 42,088
G12-001-043 REGR1S8020B06 1,065,057 1,107,108 42,052

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.