DOGAN: CDS Information : RER

Display	Clone

Rhodococcus erythropolis PR4 (= NBRC 100887) chromosome

Overview
Genome
Clone

Center position		change
ID		change
Gene name		change

Metabolism

Carbohydrate Metabolism

Glycolysis / Gluconeogenesis

Pyruvate metabolism

Glyoxylate and dicarboxylate metabolism

Propanoate metabolism

Butanoate metabolism

Inositol metabolism

Inositol phosphate metabolism

Citrate cycle (TCA cycle)

Pentose phosphate pathway

Fructose and mannose metabolism

Galactose metabolism

Ascorbate and aldarate metabolism

Starch and sucrose metabolism

Aminosugars metabolism

Nucleotide sugars metabolism

Energy Metabolism

electron transport system

ATP synthesis

Sulfur metabolism

ferredoxin, thioredoxin, rubredoxin

Lipid Metabolism

Fatty acid biosynthesis (path 1)

Fatty acid biosynthesis (path 2)

Fatty acid metabolism

Synthesis and degradation of ketone bodies

Sterols biosynthesis

Glycerolipid metabolism

Phospholipid degradation

Nucleotide Metabolism

Purine metabolism

Pyrimidine metabolism

Amino Acid Metabolism

Glutamate metabolism & Nitrogen assimilation

Arginine and proline metabolism

Histidine metabolism

Tyrosine metabolism

Phenylalanine metabolism

Tryptophan metabolism

Phenylalanine, tyrosine and tryptophan biosynthesis

Urea cycle and metabolism of amino groups

Alanine and aspartate metabolism

Glycine, serine and threonine metabolism

Methionine metabolism

Cysteine metabolism

Valine, leucine and isoleucine degradation

Valine, leucine and isoleucine biosynthesis

Lysine biosynthesis

Lysine degradation

Metabolism of Cofactors and Vitamins

Thiamine metabolism

Riboflavin metabolism

Vitamin B6 metabolism

Nicotinate and nicotinamide metabolism

Pantothenate and CoA biosynthesis

Biotin metabolism

Folate biosynthesis

Porphyrin and chlorophyll metabolism

Ubiquinone biosynthesis

Biosynthesis of Secondary Metabolites and Biodegradation of Xenobiotics

Degradation of aromatic compounds

Degradation of others

Others

Genetic Information Processing

Transcription

RNA polymerase

HTH family transcriptional regulators

sigma factor

Translation

Ribosome

Translation factors

Aminoacyl-tRNA biosynthesis

Replication and Repair

DNA polymerase

Replication complex

Others

Environmental Information and Cellular Processing

Membrane Transport

ABC transporter

transporters

Protein export

Phosphotransferase system (PTS)

Signal Transduction

Two-component system

Cellular Processes

Peptidoglycan biosynthesis

Cell wall/membrane/envelope biogenesis

Cell division

Others

Unclassified

putative function (general)

uncharacterized protein

Transposon-related functions

hypothetical protein

hypothetical protein (prediction only)

Genome	Display	Sync
chromosome

Organism	Rhodococcus erythropolis PR4 (= NBRC 100887)
Replicon	chromosome
Start / Stop / Direction	2,580,038 / 2,581,069 / +
Location	2580038..2581069
Type	CDS
Length	1,032 bp (343 aa)

Product	6-phosphofructokinase
Gene name
Functional category	Metabolism - Carbohydrate Metabolism
EC number	2.7.1.-
Note	Similar to the ATP-dependent 6-phosphofructokinase 1 (EC 2.7.1.11) of Streptomyces coelicolor (O08333). Similar to the pyrophosphate-dependent 6-phosphatefructokinase (EC 2.7.1.90) of Amycolatopsis methanolica (Q59126).
KEGG pathway	map:00010 KO:K00850 map:00051 KO:K00850 map:00030 KO:K00850 map:00051 KO:K00895
Sequence feature
References	Uniprot:Q59126 Pubmed:7961441,8550409,11717283 Uniprot:O08333 Pubmed:9055413

BLASTP
Database:UniProtKB:14.0

show BLAST table

1	E=1e-179	Q0S2I2_RHOSR	6-phosphofructokinase	Alignment
2	E=1e-163	Q5YRV1_NOCFA	Putative 6-phosphofructokinase	Alignment
3	E=1e-162	B1MDU2_MYCAB	6-phosphofructokinase PfkA	Alignment
4	E=1e-160	A0QJD3_MYCA1	6-phosphofructokinase 1	Alignment
5	E=1e-160	Q73VH0_MYCPA	PfkA	Alignment

HAMAP
Database:HAMAP:20080521

MF_00339 K6PF

InterPro
Database:interpro:18.0

IPR000023 Phosphofructokinase (Domain)
	SSF53784 Phosphofructokinase
	PF00365 PFK
IPR000023 Phosphofructokinase (Family)
	PS00433 PHOSPHOFRUCTOKINASE
	PTHR13697 PHOSPHOFRUCTOKINASE
	PF00365 PFK
	SSF53784 Phosphofructokinase
	PD000707 K6PF_CORGL_Q8NR14;
IPR012003 ATP-dependent phosphofructokinase, prokaryotic (Family)
	PIRSF000532 ATP-dependent phosphofructokinase, prokaryotic type
IPR012829 Phosphofructokinase, pyrophosphate dependent (Family)
	TIGR02483 PFK_mixed: phosphofructokinase
IPR015912 Phosphofructokinase, conserved site (Conserved_site)
	PS00433 PHOSPHOFRUCTOKINASE
IPR015912 Phosphofructokinase, C-terminal (Domain)
	PS00433 PHOSPHOFRUCTOKINASE
IPR015913 Phosphofructokinase_core (Domain)
	PD000707 K6PF_CORGL_Q8NR14;

SignalP

No significant hit

TMHMM

No significant hit

SOSUI

No significant hit

size of protein

343 amino acids

molecular mass

36,811.91 Da

pI

6.44

aa composition

Ala	Val	Leu	Ile	Phe	Trp	Pro	Met	Gly	Ser
9.3 (32aa)	8.5 (29aa)	8.2 (28aa)	6.7 (23aa)	3.5 (12aa)	0.9 (3aa)	4.1 (14aa)	2 (7aa)	12 (41aa)	3.2 (11aa)
Thr	Cys	Asn	Gln	Tyr	Lys	His	Arg	Asp	Glu
8.2 (28aa)	1.2 (4aa)	1.7 (6aa)	2.9 (10aa)	0.6 (2aa)	3.2 (11aa)	3.2 (11aa)	7.9 (27aa)	7.9 (27aa)	5 (17aa)

>RER_23890 6-phosphofructokinase
ATGCGAATCGGAATCCTCACGGGCGGCGGCGACTGCCCGGGCTTGAACGCGGTCATCCGC
GCCGTCGTACGTACGTCGGCCGGTCGTTACGGCAGTACCGTGGTCGGATTCCGGGACGGC
TGGCGAGGATTGCTCGAGGACCGCAAGGTCCCGCTCGACTCCGATGACCGCATCAACCGC
ATCCTCACCCGCGGCGGCACGATCCTCGGCACCGCTCGCGTGAACCCCGACAAACTCCGT
GCGGGCCTCGATCAGATCAAGCAGACCCTCGACGACAACGGGATCGACGTCCTGATCCCG
ATCGGCGGCGAAGGCACACTCACCGCGGCCAGTTGGCTTTCCGAGAGCGGCGTACCCGTG
ATCGGTGTGCCCAAGACGATCGACAACGACATCGATTGCACTGACGTGACTTTCGGTTTC
GACACCGCCTTGGCTGTCGCCACCGACGCCATCGACAGGCTCCACACCACGGCCGAATCG
CACCAGCGCGTCATGCTCGTCGAGGTCATGGGCCGGCATGCGGGCTGGATCGCGCTGCAA
GCCGGACTGGCGTCGGGGGCACACCTGACTCTGGTTCCGGAACAGCCGTTCGACGTCGAC
GAGGTATGCGCGATGGTCAAGAAGCGCTTCCAGCGCGGCGACTCCCACTTCATCTGCGTC
GTCGCTGAAGGCGCGATGCCCGACCCCGCGTCGATGACCCTGCGCGAAGGTGGCATAGAC
GAGTTCGGCCACAAGATCTTCACCGGCGTCGCGCAGCAGCTCGGAAACGAGATCGAGCGC
CGCATCGGCAAGGAAGTTCGCACCACCGTCCTCGGACACATTCAGCGCGGCGGCACCCCG
ACGCCGCACGACCGCATCCTCGCCACTCGCTTCGGCGTTCATGCCACCGACGCAGCTCAC
CGCGGAGATTTCGGTCAGATGGTCGCGTTGCACGGAACGTCCATCGACCTTGTTCCGCTC
GCCGAGGCGACCCGCAAACTCAAGACGGTGCCCAAGGAGCGCTACGAGGAGGCAGCCGCA
TTCTTCGGCTGA


>RER_23890 6-phosphofructokinase
MRIGILTGGGDCPGLNAVIRAVVRTSAGRYGSTVVGFRDGWRGLLEDRKVPLDSDDRINR
ILTRGGTILGTARVNPDKLRAGLDQIKQTLDDNGIDVLIPIGGEGTLTAASWLSESGVPV
IGVPKTIDNDIDCTDVTFGFDTALAVATDAIDRLHTTAESHQRVMLVEVMGRHAGWIALQ
AGLASGAHLTLVPEQPFDVDEVCAMVKKRFQRGDSHFICVVAEGAMPDPASMTLREGGID
EFGHKIFTGVAQQLGNEIERRIGKEVRTTVLGHIQRGGTPTPHDRILATRFGVHATDAAH
RGDFGQMVALHGTSIDLVPLAEATRKLKTVPKERYEEAAAFFG

NBRC No.	clone name	start	stop	length(bp)
G12-001-101	REGR1S7017E07	2,560,218	2,602,480	42,263

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.

CDS Information : RER_23890

Genomic map

Rhodococcus erythropolis PR4 (= NBRC 100887) chromosome

Location

Annotation

Computational search results

Calculated information (Amino acid sequence)

Sequence

Covered clones

Distribution of Our Microbial Genomic DNA clones