CDS Information : RER_23960

Display	1000bp 10000bp 100000bp Clone

Rhodococcus erythropolis PR4 (= NBRC 100887) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Rhodococcus erythropolis PR4 (= NBRC 100887)
Replicon	chromosome
Start / Stop / Direction	2,590,771 / 2,590,256 / -
Location	complement(2590256..2590771)
Type	CDS
Length	516 bp (171 aa)

Product	hypothetical protein
Gene name
Functional category	Unclassified - hypothetical protein
EC number
Note
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=7e-53 Q0S2H6_RHOSR Putative uncharacterized protein Alignment 2 E=4e-26 Q5YRV9_NOCFA Putative uncharacterized protein Alignment 3 E=7e-23 B2HIG3_MYCMM Low molecular weight protein antigen 6, Cfp6 Alignment 4 E=2e-22 A0PPX9_MYCUA Low molecular weight protein antigen 6, Cfp6 Alignment 5 E=2e-22 A4TE10_MYCGI Putative uncharacterized protein Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR020535 Low molecular weight antigen Cfp6 (Family) PD072817   CFP6_MYCTU_O53251; IPR020535 Low molecular weight antigen Cfp6 (Region) PD072817   CFP6_MYCTU_O53251;
SignalP	No significant hit
TMHMM	Transmembrane 1
SOSUI	Transmembrane 1

size of protein	171 amino acids
molecular mass	18,919.60 Da
pI	4.88
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 14.6 (25aa) 7 (12aa) 8.2 (14aa) 5.3 (9aa) 5.8 (10aa) 2.3 (4aa) 8.2 (14aa) 1.2 (2aa) 3.5 (6aa) 8.2 (14aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.3 (9aa) 0.6 (1aa) 0.6 (1aa) 2.3 (4aa) 1.8 (3aa) 3.5 (6aa) 1.2 (2aa) 7 (12aa) 3.5 (6aa) 9.9 (17aa)

>RER_23960 hypothetical protein
GTGCCACCGGCTCAATCATCCCACACGCCGAAACCACTTCGGCACGTCATCCGCATTTCG
CAGCTCGCTTACATGGCGTGCGCGTTCCTCCTGTTCGCGGTCAGCTTCCCGATCTTCGGG
TGGCCCGTCGCCTTCAGCTGGTTGCTGATCCTTCCGATCATCGCCGTCTATCTCGTCGCG
CGACTGCGCACCACCGTCAGCCCTGACGGCCTCGAGGTCCGCTCGACGTTCTCCAAGCGC
ACCCTCGCCTGGGACGACGTCAAGGGTTTCCGCTTCCCGAAGCGCAGCTGGGCGCGCGCG
GAACTCACCGACGGAACCGAGGTGACCCTGCCTGCGGTCAGCTTCGTCAGGCTTCCCGAG
ATCGCGATCGCCAGCGGCGGCCGCATCACTGATCCCTATGCATCGGCGGCAGAAGCCTTC
GCCGCCAAGGAAGCCGAAGAGGAAGAAGCAGAAGCAGAAGCAGAATCCGAGGTCGCCGAG
AACTCACAGGACCAGCCCGAAGAGAAGCGCCCGTAA


>RER_23960 hypothetical protein
MPPAQSSHTPKPLRHVIRISQLAYMACAFLLFAVSFPIFGWPVAFSWLLILPIIAVYLVA
RLRTTVSPDGLEVRSTFSKRTLAWDDVKGFRFPKRSWARAELTDGTEVTLPAVSFVRLPE
IAIASGGRITDPYASAAEAFAAKEAEEEEAEAEAESEVAENSQDQPEEKRP

NBRC No.	clone name	start	stop	length(bp)
G12-001-101	REGR1S7017E07	2,560,218	2,602,480	42,263
G12-001-102	REGR1S8010A07	2,589,809	2,626,057	36,249

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.