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CDS Information : RER_24160

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close this sectionGenomic map

Display Clone

Rhodococcus erythropolis PR4 (= NBRC 100887) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Rhodococcus erythropolis PR4 (= NBRC 100887)
Replicon chromosome
Start / Stop / Direction 2,613,080 / 2,614,186 / +
Location 2613080..2614186
Type CDS
Length 1,107 bp (368 aa)

close this sectionAnnotation

Product D-alanine--D-alanine ligase
Gene name ddl
Functional category Environmental Information and Cellular Processing
- Cellular Processes
EC number 6.3.2.4
Note
KEGG pathway map:00550 KO:K01921
Sequence feature
References Uniprot:Q9ZGN0 Pubmed:11073937,12499203

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=1e-175DDL_RHOSRD-alanine--D-alanine ligase
D-alanylalanine synthetase
D-Ala-D-Ala ligase
Alignment
2E=1e-160DDL_NOCFAD-alanine--D-alanine ligase
D-alanylalanine synthetase
D-Ala-D-Ala ligase
Alignment
3E=1e-143B1MDP3_MYCABProbable D-alanine--D-alanine ligase DdlAAlignment
4E=1e-142DDL_MYCSMD-alanine--D-alanine ligase
D-alanylalanine synthetase
D-Ala-D-Ala ligase
Alignment
5E=1e-142DDL_MYCSJD-alanine--D-alanine ligase
D-alanylalanine synthetase
D-Ala-D-Ala ligase
Alignment
HAMAP
Database:HAMAP:20080521
 [6-361]  40.738 MF_00047
MF_00047   DDL
InterPro
Database:interpro:18.0
IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site (Conserved_site)
 [304-331]  PS00844
PS00844   DALA_DALA_LIGASE_2
 [113-124]  PS00843
PS00843   DALA_DALA_LIGASE_1
IPR000291 D-alanine--D-alanine ligase/VANA/B/C (Family)
 [113-124]  PS00843
PS00843   DALA_DALA_LIGASE_1
 [304-331]  PS00844
PS00844   DALA_DALA_LIGASE_2
IPR005905 D-alanine--D-alanine ligase (Family)
 [7-361]  2.1e-145 TIGR01205
TIGR01205   D_ala_D_alaTIGR: D-alanine--D-alanine ligas
 [97-363]  6.1e-63 PTHR23132
PTHR23132   D-ALANINE--D-ALANINE LIGASE
IPR011095 D-alanine--D-alanine ligase, C-terminal (Domain)
 [146-358]  2.7e-97 PF07478
PF07478   Dala_Dala_lig_C
IPR011127 D-alanine--D-alanine ligase, N-terminal (Domain)
 [6-145]  1.1e-65 PF01820
PF01820   Dala_Dala_lig_N
IPR011761 ATP-grasp fold (Domain)
 [151-358]  48.158 PS50975
PS50975   ATP_GRASP
IPR013816 ATP-grasp fold, subdomain 2 (Domain)
 [203-360]  4.2e-45 G3DSA:3.30.470.20
G3DSA:3.30.470.20   no description
IPR013817 Pre-ATP-grasp fold (Domain)
 [3-133]  8.3e-31 G3DSA:3.40.50.20
G3DSA:3.40.50.20   no description
IPR016185 PreATP-grasp-like fold (Domain)
 [5-145]  6.1e-38 SSF52440
SSF52440   PreATP-grasp domain
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 368 amino acids
molecular mass 38,719.75 Da
pI 4.26
aa composition
AlaValLeuIlePheTrpProMetGlySer
9.2
(34aa)
11.4
(42aa)
8.2
(30aa)
6
(22aa)
3.5
(13aa)
0.8
(3aa)
5.2
(19aa)
1.6
(6aa)
10.3
(38aa)
8.7
(32aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.2
(19aa)
1.1
(4aa)
2.2
(8aa)
1.4
(5aa)
1.9
(7aa)
3.3
(12aa)
1.1
(4aa)
4.9
(18aa)
9
(33aa)
5.2
(19aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G12-001-102 REGR1S8010A07 2,589,809 2,626,057 36,249
G12-001-103 REGR1S7019F12 2,612,061 2,648,860 36,800

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.