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CDS Information : RER_35380

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close this sectionGenomic map

Display Clone

Rhodococcus erythropolis PR4 (= NBRC 100887) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Rhodococcus erythropolis PR4 (= NBRC 100887)
Replicon chromosome
Start / Stop / Direction 3,879,068 / 3,880,459 / +
Location 3879068..3880459
Type CDS
Length 1,392 bp (463 aa)

close this sectionAnnotation

Product glutamate decarboxylase
Gene name
Functional category Metabolism
- Amino Acid Metabolism
EC number 4.1.1.15
Note
KEGG pathway map:00251 KO:K01580
map:00650 KO:K01580
Sequence feature
References Uniprot:Q9CG20 Pubmed:10411264

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0A1RBN1_ARTATGlutamate decarboxylaseAlignment
2E=0A7A7D8_BIFADPutative uncharacterized proteinAlignment
3E=0A9WSM2_RENSMGlutamate decarboxylaseAlignment
4E=0Q0GE18_STRTRGlutamate decarboxylaseAlignment
5E=0B1S581_9BIFIPutative uncharacterized proteinAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR002129 Pyridoxal-dependent decarboxylase (Family)
 [35-369]  1.1e-88 PF00282
PF00282   Pyridoxal_deC
 [47-461]  2.6e-186 PTHR11999
PTHR11999   GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE
IPR010107 Glutamate decarboxylase (Family)
 [17-446]  5.7e-266 TIGR01788
TIGR01788   Glu-decarb-GAD: glutamate decarboxylase
 [47-461]  2.6e-186 PTHR11999:SF1
PTHR11999:SF1   GLUTAMATE DECARBOXYLASE
IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (Domain)
 [65-342]  4.9e-31 G3DSA:3.40.640.10
G3DSA:3.40.640.10   no description
IPR015424 Pyridoxal phosphate-dependent transferase, major region (Domain)
 [17-449]  6.5e-122 SSF53383
SSF53383   PLP-dependent transferases
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 463 amino acids
molecular mass 52,181.14 Da
pI 4.73
aa composition
AlaValLeuIlePheTrpProMetGlySer
8
(37aa)
6.3
(29aa)
9.9
(46aa)
5.2
(24aa)
3.5
(16aa)
2.8
(13aa)
5.8
(27aa)
3.2
(15aa)
6.7
(31aa)
6.5
(30aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.4
(25aa)
0.9
(4aa)
2.8
(13aa)
2.8
(13aa)
3.9
(18aa)
3.9
(18aa)
3
(14aa)
5.2
(24aa)
8.2
(38aa)
6
(28aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G12-001-153 REGR1S8010E06 3,849,471 3,888,392 38,922
G12-001-154 REGR1S7018G06 3,875,457 3,920,761 45,305

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.