DOGAN: CDS Information : RER

Display	Clone

Rhodococcus erythropolis PR4 (= NBRC 100887) chromosome

Overview
Genome
Clone

Center position		change
ID		change
Gene name		change

Metabolism

Carbohydrate Metabolism

Glycolysis / Gluconeogenesis

Pyruvate metabolism

Glyoxylate and dicarboxylate metabolism

Propanoate metabolism

Butanoate metabolism

Inositol metabolism

Inositol phosphate metabolism

Citrate cycle (TCA cycle)

Pentose phosphate pathway

Fructose and mannose metabolism

Galactose metabolism

Ascorbate and aldarate metabolism

Starch and sucrose metabolism

Aminosugars metabolism

Nucleotide sugars metabolism

Energy Metabolism

electron transport system

ATP synthesis

Sulfur metabolism

ferredoxin, thioredoxin, rubredoxin

Lipid Metabolism

Fatty acid biosynthesis (path 1)

Fatty acid biosynthesis (path 2)

Fatty acid metabolism

Synthesis and degradation of ketone bodies

Sterols biosynthesis

Glycerolipid metabolism

Phospholipid degradation

Nucleotide Metabolism

Purine metabolism

Pyrimidine metabolism

Amino Acid Metabolism

Glutamate metabolism & Nitrogen assimilation

Arginine and proline metabolism

Histidine metabolism

Tyrosine metabolism

Phenylalanine metabolism

Tryptophan metabolism

Phenylalanine, tyrosine and tryptophan biosynthesis

Urea cycle and metabolism of amino groups

Alanine and aspartate metabolism

Glycine, serine and threonine metabolism

Methionine metabolism

Cysteine metabolism

Valine, leucine and isoleucine degradation

Valine, leucine and isoleucine biosynthesis

Lysine biosynthesis

Lysine degradation

Metabolism of Cofactors and Vitamins

Thiamine metabolism

Riboflavin metabolism

Vitamin B6 metabolism

Nicotinate and nicotinamide metabolism

Pantothenate and CoA biosynthesis

Biotin metabolism

Folate biosynthesis

Porphyrin and chlorophyll metabolism

Ubiquinone biosynthesis

Biosynthesis of Secondary Metabolites and Biodegradation of Xenobiotics

Degradation of aromatic compounds

Degradation of others

Others

Genetic Information Processing

Transcription

RNA polymerase

HTH family transcriptional regulators

sigma factor

Translation

Ribosome

Translation factors

Aminoacyl-tRNA biosynthesis

Replication and Repair

DNA polymerase

Replication complex

Others

Environmental Information and Cellular Processing

Membrane Transport

ABC transporter

transporters

Protein export

Phosphotransferase system (PTS)

Signal Transduction

Two-component system

Cellular Processes

Peptidoglycan biosynthesis

Cell wall/membrane/envelope biogenesis

Cell division

Others

Unclassified

putative function (general)

uncharacterized protein

Transposon-related functions

hypothetical protein

hypothetical protein (prediction only)

Genome	Display	Sync
chromosome

Organism	Rhodococcus erythropolis PR4 (= NBRC 100887)
Replicon	chromosome
Start / Stop / Direction	4,282,952 / 4,281,693 / -
Location	complement(4281693..4282952)
Type	CDS
Length	1,260 bp (419 aa)

Product	UDP-N-acetylglucosamine 1-carboxyvinyltransferase Synonym: UDP-N-acetylglucosamine enolpyruvyl transferase
Gene name	murA
Functional category	Metabolism - Carbohydrate Metabolism
EC number	2.5.1.7
Note
KEGG pathway	map:00530 KO:K00790
Sequence feature
References	Uniprot:P0A749 Pubmed:7608103,8994972,9485407

BLASTP
Database:UniProtKB:14.0

show BLAST table

1	E=0	Q0SGQ3_RHOSR	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	Alignment
2	E=0	MURA_NOCFA	UDP-N-acetylglucosamine 1-carboxyvinyltransferase Enoylpyruvate transferase UDP-N-acetylglucosamine enolpyruvyl transferase EPT	Alignment
3	E=0	A4T8J7_MYCGI	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	Alignment
4	E=0	A1UJY0_MYCSK	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	Alignment
5	E=0	A3Q3A7_MYCSJ	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	Alignment

HAMAP
Database:HAMAP:20080521

MF_00111 MURA

InterPro
Database:interpro:18.0

IPR001986 3-phosphoshikimate 1-carboxyvinyltransferase (Domain)
	G3DSA:3.65.10.10 no description
	PF00275 EPSP_synthase
	PD001867 Q9EXE3_MYCCH_Q9EXE3;
IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Family)
	TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyviny
	PTHR21090:SF4 UDP-N-ACETYLGLUCOSAMINE ENOLPYRUVYL TRANSFERASE
IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (Domain)
	SSF55205 EPT/RTPC-like

SignalP

No significant hit

TMHMM

No significant hit

SOSUI

No significant hit

size of protein

419 amino acids

molecular mass

44,557.14 Da

pI

5.78

aa composition

Ala	Val	Leu	Ile	Phe	Trp	Pro	Met	Gly	Ser
10.7 (45aa)	11.5 (48aa)	9.8 (41aa)	5 (21aa)	2.9 (12aa)	0.5 (2aa)	4.5 (19aa)	2.6 (11aa)	10.7 (45aa)	4.5 (19aa)
Thr	Cys	Asn	Gln	Tyr	Lys	His	Arg	Asp	Glu
5.5 (23aa)	1.4 (6aa)	2.9 (12aa)	1.2 (5aa)	0.7 (3aa)	2.1 (9aa)	2.9 (12aa)	7.9 (33aa)	5.5 (23aa)	7.2 (30aa)

>RER_39010 UDP-N-acetylglucosamine 1-carboxyvinyltransferase
GTGAGTGAGCACTTTCTTGTGACCGGGGGTAACCGCCTCGAAGGTGAAGTACTGGTGGGA
GGGGCCAAGAACAGTGTGTTGAAGCTGATGGCCGCTGCGCTGTTGGCCGAAGGCACCACT
GTGGTGACCAACTGCCCGGACATTCTCGACGTGCCCCTGATGGCGGACGTCTTGCGAGGG
CTGGGCTGCGAGGTCGAACTCGAAGACTCCGAAGTGCGGATCACGACGCCGGCCGAGCCG
AAATATCACGCTGATTTTGACGCGGTCAAGCAGTTTCGGGCGTCGGTGTGTGTGCTTGGT
CCGCTGGTCGCGCGTTGTCGACGCGCTGTTGTCGCACTTCCTGGCGGCGATGCGATCGGT
TCGAGGCCACTCGACATGCACCAATCCGGGCTCCGCCTGTTGGGCGCGCGCAGCGAAATC
GAACACGGATGTGTCGTTGCCGAGGCAGACGACCTTCACGGCGCGAACATTCGCCTGGTC
TTCCCGTCTGTGGGTGCAACCGAGAACATCTTGATGGCAGCAGTGCTCGCCCGAGGTGAA
ACGGTGATCGACAACGCTGCACGTGAGCCCGAGATCGTGGATCTCTGCAACATGCTCAAC
GAAATGGGCGCCAAGGTATCGGGCGGCGGAAGTTCGACGCTCACCATTCAAGGCGTCCGC
AAGTTGGAACCGACTACGCACCGTGTCATCGGTGACCGCATCGTTGCCGCAACATGGGGT
GTCGCTGCCTCCATGACCAGGGGTGACGTCCGAGTTCGCGGGGTGAACCACAAGCATCTC
GGGTTGGTCCTCGACAAGCTTCGGACAGCCGGCGCGGAGGTGACTCCCGAGATAGACGGT
TTCCGTGTCATCCAGCGTGAACGGCCCAAAGCAGTCAATTTCGCGACATTGCCTTACCCC
GGATTCCCGACCGACCTGCAGCCGATGGCAATCGGTTTGGCGGCGGTTGCCGAGGGCACG
TCGATGATCACCGAGAACGTATTCGAATCGCGTTTCCGATTTGTCGAGGAAATGATCCGA
CTCGGCGCCGACGCTCGTACTGACGGTCACCATGCTGTGATCCGCGGAGTTCCAGTGCTG
TCGAGTGCGCCGGTGTGGTCTTCGGACATTCGGGCAGGCGCCGGGCTCGTGCTTGCCGGG
TTGGTCGCGGACGGAACCACCGAAGTCCACGACATCTTCCACATCGACCGTGGGTACCCG
CGTTTCGTCGAGAATCTTCGTGGACTCGGGGGAGTGATCGAGAGGGTGGGCTCCGAATAG


>RER_39010 UDP-N-acetylglucosamine 1-carboxyvinyltransferase
MSEHFLVTGGNRLEGEVLVGGAKNSVLKLMAAALLAEGTTVVTNCPDILDVPLMADVLRG
LGCEVELEDSEVRITTPAEPKYHADFDAVKQFRASVCVLGPLVARCRRAVVALPGGDAIG
SRPLDMHQSGLRLLGARSEIEHGCVVAEADDLHGANIRLVFPSVGATENILMAAVLARGE
TVIDNAAREPEIVDLCNMLNEMGAKVSGGGSSTLTIQGVRKLEPTTHRVIGDRIVAATWG
VAASMTRGDVRVRGVNHKHLGLVLDKLRTAGAEVTPEIDGFRVIQRERPKAVNFATLPYP
GFPTDLQPMAIGLAAVAEGTSMITENVFESRFRFVEEMIRLGADARTDGHHAVIRGVPVL
SSAPVWSSDIRAGAGLVLAGLVADGTTEVHDIFHIDRGYPRFVENLRGLGGVIERVGSE

NBRC No.	clone name	start	stop	length(bp)
G12-001-168	REGR1S8011B02	4,252,126	4,295,916	43,791
G12-001-169	REGR1S7018G07	4,274,552	4,317,871	43,320

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.

CDS Information : RER_39010

Genomic map

Rhodococcus erythropolis PR4 (= NBRC 100887) chromosome

Location

Annotation

Computational search results

Calculated information (Amino acid sequence)

Sequence

Covered clones

Distribution of Our Microbial Genomic DNA clones