CDS Information : RER_39040

Display	1000bp 10000bp 100000bp Clone

Rhodococcus erythropolis PR4 (= NBRC 100887) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Rhodococcus erythropolis PR4 (= NBRC 100887)
Replicon	chromosome
Start / Stop / Direction	4,284,430 / 4,284,062 / -
Location	complement(4284062..4284430)
Type	CDS
Length	369 bp (122 aa)

Product	ATP synthase epsilon chain
Gene name	atpC
Functional category	Metabolism - Energy Metabolism
EC number	3.6.3.14
Note	May form the F1 complex component of F-type ATP synthase with the alpha chain (encoded by RER_39070), beta chain (encoded by RER_39050), gamma chain (encoded by RER_39060) and delta chain (encoded by RER_39080).
KEGG pathway	map:00190 KO:K02114 map:00193 KO:K02114
Sequence feature
References	Uniprot:P0A2Z7 Pubmed:7828915 Uniprot:P0A6E6 Pubmed:7592682,9756905

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=6e-52 ATPE_RHOSR ATP synthase epsilon chain ATP synthase F1 sector epsilon subunit Alignment 2 E=1e-39 ATPE_NOCFA ATP synthase epsilon chain ATP synthase F1 sector epsilon subunit Alignment 3 E=3e-31 ATPE_SACEN ATP synthase epsilon chain ATP synthase F1 sector epsilon subunit Alignment 4 E=1e-30 ATPE_COREF ATP synthase epsilon chain ATP synthase F1 sector epsilon subunit Alignment 5 E=1e-30 ATPE_CORGB ATP synthase epsilon chain ATP synthase F1 sector epsilon subunit Alignment
HAMAP Database:HAMAP:20080521	MF_00530   ATPE
InterPro Database:interpro:18.0	IPR001469 ATPase, F1 complex, delta/epsilon subunit (Family) PTHR13822   ATP SYNTHASE DELTA/EPSILON CHAIN PF02823   ATP-synt_DE_N SSF51344   Epsilon subunit of F1F0-ATP synthase N-terminal domain TIGR01216   ATP_synt_epsi: ATP synthase F1, epsilon sub PD000944   Q6NHS8_CORDI_Q6NHS8; G3DSA:2.60.15.10   no description IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal (Domain) G3DSA:2.60.15.10   no description PF02823   ATP-synt_DE_N PD000944   Q6NHS8_CORDI_Q6NHS8; SSF51344   Epsilon subunit of F1F0-ATP synthase N-terminal domain
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	122 amino acids
molecular mass	12,511.18 Da
pI	3.98
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 15.6 (19aa) 12.3 (15aa) 8.2 (10aa) 6.6 (8aa) 0.8 (1aa) 0.8 (1aa) 2.5 (3aa) 3.3 (4aa) 9.8 (12aa) 5.7 (7aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 8.2 (10aa) 0 (0aa) 0.8 (1aa) 4.1 (5aa) 0 (0aa) 1.6 (2aa) 1.6 (2aa) 3.3 (4aa) 4.1 (5aa) 10.7 (13aa)

>RER_39040 ATP synthase epsilon chain
ATGGCTGAGATGACCGTAGAACTCGTTGCCGTCGAGCAGCGCTTGTGGTCTGGTTCGGCG
ACGCTGGTCAGCGCTCAGACCACCGAGGGCGAAATCGGCATCATGCCCGGGCATGAGCCG
GTCCTCGGCCAGCTGATCGAGGGCGGAACCGTGTCGATCACCCCGGTCGACGGCGAGCGT
ATCGTTGCTGCAGTACACGGAGGGTTCCTCTCCGTCACTGCGACGACGGTGACGATTCTT
GCCGAGTCCGCGGACATGGCACAGGACATCGACGTCGAGGCAGCCAAGGCTGTCTTGGCC
GAGAACTCGGGCGACCTCGAAGCGATTGCGGTCGCCAAGGGTCAGCTCCGGGCCGTCGAG
CGCGCGTAA


>RER_39040 ATP synthase epsilon chain
MAEMTVELVAVEQRLWSGSATLVSAQTTEGEIGIMPGHEPVLGQLIEGGTVSITPVDGER
IVAAVHGGFLSVTATTVTILAESADMAQDIDVEAAKAVLAENSGDLEAIAVAKGQLRAVE
RA

NBRC No.	clone name	start	stop	length(bp)
G12-001-168	REGR1S8011B02	4,252,126	4,295,916	43,791
G12-001-169	REGR1S7018G07	4,274,552	4,317,871	43,320

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.