CDS Information : RER_39190

Display	1000bp 10000bp 100000bp Clone

Rhodococcus erythropolis PR4 (= NBRC 100887) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Rhodococcus erythropolis PR4 (= NBRC 100887)
Replicon	chromosome
Start / Stop / Direction	4,299,969 / 4,297,831 / -
Location	complement(4297831..4299969)
Type	CDS
Length	2,139 bp (712 aa)

Product	transcription termination factor Rho
Gene name	rho
Functional category	Genetic Information Processing - Transcription
EC number
Note
KEGG pathway
Sequence feature
References	Uniprot:P52157 Pubmed:8702978 Uniprot:P0AG30 Pubmed:3030561,1716628,8022288

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=0 Q0SGN6_RHOSR Transcription termination factor Rho Alignment 2 E=0 Q5Z0Z4_NOCFA Putative transcription termination factor Rho Alignment 3 E=0 A0R218_MYCS2 Transcription termination factor Rho Alignment 4 E=0 A1TD72_MYCVP Transcription termination factor Rho Alignment 5 E=0 A4T8L9_MYCGI Transcription termination factor Rho Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding (Domain) PF00006   ATP-synt_ab IPR003593 AAA+ ATPase, core (Domain) SM00382   no description IPR004665 Transcription termination factor Rho (Family) TIGR00767   rho: transcription termination factor Rho IPR011112 Rho termination factor, N-terminal (Domain) SSF68912   Rho termination factor, N-terminal domain PF07498   Rho_N IPR011113 Rho termination factor, RNA-binding (Domain) PF07497   Rho_RNA_bind IPR011129 Cold shock protein (Domain) SM00357   no description
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	712 amino acids
molecular mass	76,671.86 Da
pI	9.14
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 11.5 (82aa) 5.6 (40aa) 7 (50aa) 3.9 (28aa) 1.4 (10aa) 0 (0aa) 5.2 (37aa) 1.4 (10aa) 9.1 (65aa) 7 (50aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 6.3 (45aa) 0.1 (1aa) 5.2 (37aa) 4.4 (31aa) 1 (7aa) 4.5 (32aa) 0.6 (4aa) 10.8 (77aa) 7.6 (54aa) 7.3 (52aa)

>RER_39190 transcription termination factor Rho
GTGACCGATACGGACCTCATCGCCACTTCTGCACCCGCCGGGTCGGAATCAGGCGACAAT
TCTCAGGCGTCATCTTCAGCATCGAACGGTGCGGTGGCGACCTCCACGAAGCGTGCCGAG
ACGCGCCGTGGTGCCGGACTCTCCGGCATGGTGCTCACCGAACTCCGCACTCTTGCGGGT
GAACTGGGCATCAAAGGCACTTCCGGCATGCGCAAGGGCGACCTGATCGCAGCCATCAAG
GAGCGCCAGGGCGGCAGCGCAAAGGCTGCACCCGCGCAGAGCGAACTCACTCTCGACGAC
GCACCCGTTGCGCGCACTCGTGCCAAGAGCACCCGCGCCGCACGCACCGAAACCCCCGCA
GCCGAAACGGCTCCCGCGGAAGAATCCGCTCCTGCCGAGGCAGCGCCTGCGCGTACCGAA
TCCGCCGAGGATTCCGATCAGAGCGCACCCCGTCGTGGACGTCAGCGTCGCGGCGCCGCT
CGTCGTGCAGGTTCACCCGACCAGGGTGAACTGAGCATCGAGCAGGACACTCCTTCGGCA
AAGTCCGACGCGGACACCTCGAAGGCCGCCGATACCTCGAAGGTCGCCGAGACCGCCAAG
GCTGAGGCTCCGGTCGAGCGTCCTGCGCGCACCGAGGGCAAGTCCGACGCTGATCAGGCT
CCCGCCGAGCAGGGCAACGAGCGTCCCCGCCGCGAGCGCAACCGGGACAATCAGGGCCAG
CGAGACAACCAGGGCCAGCGCGAGAACCAGGGCAACCGGGGTAACCAGGATCGCCAGGAT
CGCCAGGACCGTCAGGATCGCGGCAATCAGAACAACGCCGGCCAGAACAACGCCGGTCCG
CGTACGGACAACCGCAACAACGGACCGGACGACGACGAAGAGGGTGGACGCGGACGCCGC
GGACGCCGTTTCCGCGAGCGCCGTGGCCGTGGTCGCGACCGCGGTGAGGGTGGCGCACCC
AACGATTCGCGTGAGACCGAAATCCGCGAGGACGACGTCCTTCAGCCGGTCGCCGGCATC
CTCGACGTGCTCGACAATTACGCATTCGTGCGTACATCCGGGTACCTCGCCGGTCCCAAC
GACGTCTACGTCTCCATGAACCTGATCCGCAAGAACGGCCTTCGCCGTGGCGACGCCATC
ACCGGTGCCGTCCGCGTCTCGCGTGACGGTGAGCAGGGCAGCCAGCGTCAGAAGTTCAAC
CCGCTGGTCCGCATCGACACGGTCAACGGCGGCGACGTCGAGGCCGCGAAGAAGCGCCCC
GAGTTCAACAAGCTCACGCCGCTGTACCCGAACCAGCGTCTGCGCCTCGAGACCGAGCAG
CACATTCTCACCACGCGTGTCATCGACCTGGTGATGCCCATCGGTAAGGGCCAGCGCGCC
CTCATCGTGAGCCCGCCCAAGGCCGGTAAGACCAGCGTGTTGCAGGCGATCGCGAATGCC
GTCGCCACCAACAATCCTGAGTGCTACCTGATGGTCATCCTCGTGGACGAGCGTCCCGAG
GAAGTGACCGACATGCAGCGCAGCGTGAAGGGTGAGGTCATTTCCTCCACCTTCGACCGC
CCGCCGGGCGATCACACCGCAGTTGCCGAGCTGGCAATCGAGCGTGCGAAGCGCCTGGTC
GAGATGGGTAAGGACGTCGTCGTACTGCTCGACTCCATCACGCGTCTGGGTCGTGCGTAC
AACAACTCCTCGCCGGCGTCCGGACGCATCCTCTCCGGTGGTGTCGACTCGACGGCGCTC
TACCCGCCGAAGCGTTTCCTCGGCGCTGCCCGCAACATCGAGAACGGCGGATCGCTCACC
ATCATCGCCACGGCGATGGTCGAGACCGGATCCACCGGCGACACCGTGATCTTCGAAGAG
TTCAAGGGCACCGGCAACGCCGAGCTCAAGCTCGATCGCAAGATCGCCGAACGCCGCGTG
TTCCCGGCCGTGGACGTCAACCCGTCCAGCACGCGTAAGGACGAGCTGCTCCTGAGCCCG
GACGAAGCTGCTGTGCTGCACAAGCTCCGCCGCGTCCTGTCCGGACTGGACTCGCATCAG
GCCATCGATCTGCTGATCGATCGACTGAAGAAGAGCAAGAACAACCTCGAGTTCCTGATG
CAGGTCTCCAAGACCGCACCGGGTGCGATCGACGACTGA


>RER_39190 transcription termination factor Rho
MTDTDLIATSAPAGSESGDNSQASSSASNGAVATSTKRAETRRGAGLSGMVLTELRTLAG
ELGIKGTSGMRKGDLIAAIKERQGGSAKAAPAQSELTLDDAPVARTRAKSTRAARTETPA
AETAPAEESAPAEAAPARTESAEDSDQSAPRRGRQRRGAARRAGSPDQGELSIEQDTPSA
KSDADTSKAADTSKVAETAKAEAPVERPARTEGKSDADQAPAEQGNERPRRERNRDNQGQ
RDNQGQRENQGNRGNQDRQDRQDRQDRGNQNNAGQNNAGPRTDNRNNGPDDDEEGGRGRR
GRRFRERRGRGRDRGEGGAPNDSRETEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPN
DVYVSMNLIRKNGLRRGDAITGAVRVSRDGEQGSQRQKFNPLVRIDTVNGGDVEAAKKRP
EFNKLTPLYPNQRLRLETEQHILTTRVIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANA
VATNNPECYLMVILVDERPEEVTDMQRSVKGEVISSTFDRPPGDHTAVAELAIERAKRLV
EMGKDVVVLLDSITRLGRAYNNSSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLT
IIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSSTRKDELLLSP
DEAAVLHKLRRVLSGLDSHQAIDLLIDRLKKSKNNLEFLMQVSKTAPGAIDD

NBRC No.	clone name	start	stop	length(bp)
G12-001-169	REGR1S7018G07	4,274,552	4,317,871	43,320

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.