CDS Information : RER_39200

Display	1000bp 10000bp 100000bp Clone

Rhodococcus erythropolis PR4 (= NBRC 100887) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Rhodococcus erythropolis PR4 (= NBRC 100887)
Replicon	chromosome
Start / Stop / Direction	4,301,417 / 4,300,473 / -
Location	complement(4300473..4301417)
Type	CDS
Length	945 bp (314 aa)

Product	homoserine kinase
Gene name	thrB
Functional category	Metabolism - Amino Acid Metabolism
EC number	2.7.1.39
Note
KEGG pathway	map:00260 KO:K00872
Sequence feature
References	Uniprot:P07128 Pubmed:2835591 Uniprot:Q935V5 Pubmed:11988515

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=1e-138 Q0SGN5_RHOSR Homoserine kinase Alignment 2 E=1e-120 KHSE_NOCFA Homoserine kinase HSK HK Alignment 3 E=7e-97 A4T8L8_MYCGI Homoserine kinase Alignment 4 E=5e-96 KHSE_MYCSS Homoserine kinase HSK HK Alignment 5 E=5e-96 KHSE_MYCSJ Homoserine kinase HSK HK Alignment
HAMAP Database:HAMAP:20080521	MF_00384   KHSE
InterPro Database:interpro:18.0	IPR000870 Homoserine kinase (Family) TIGR00191   thrB: homoserine kinase PIRSF000676   Homoserine kinase IPR006203 GHMP kinase, ATP-binding, conserved site (Conserved_site) PS00627   GHMP_KINASES_ATP IPR006203 GHMP kinase, ATP-binding region (Domain) PS00627   GHMP_KINASES_ATP IPR006204 GHMP kinase (Domain) PF00288   GHMP_kinases_N IPR013750 GHMP kinase, C-terminal (Domain) PF08544   GHMP_kinases_C IPR014721 Ribosomal protein S5 domain 2-type fold (Domain) G3DSA:3.30.230.10   no description IPR020568 Ribosomal protein S5 domain 2-type fold (Domain) SSF54211   Ribosomal protein S5 domain 2-like
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	314 amino acids
molecular mass	32,176.36 Da
pI	4.36
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 15.9 (50aa) 9.2 (29aa) 12.4 (39aa) 4.1 (13aa) 1.3 (4aa) 1.3 (4aa) 6.4 (20aa) 0.6 (2aa) 9.2 (29aa) 8 (25aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 6.4 (20aa) 0.6 (2aa) 1.6 (5aa) 1.9 (6aa) 0.6 (2aa) 0.3 (1aa) 2.2 (7aa) 5.7 (18aa) 5.1 (16aa) 7 (22aa)

>RER_39200 homoserine kinase
ATGACTATAACCCTGCCTATCGGCCTTTCGGTGACTGCTCGCGTCCCGGCCTCGAGTGCA
AACTTGGGGCCGGGGTTCGACACCCTCGGTCTGGCGTTGGGGTTGTACGACGAAATCGTG
GTCACCACAACGGATTCGGGCCTTCAGATTCGCGTCGAAGGTGAAGGCGCTGCCGACGTA
CCTTGGGGTCCTTCGCATCTCGTGGTTCGCGCTATCGAGCGCGGTCTCGAAGCGGCCGGG
GTGTGGGCCAGTGGCCTGGACGTGTTGTGCCGCAACGCGATCCCGCACTCGCGCGGGTTG
GGATCCTCGGCTTCTGCGGCTGTCGGCGGACTGGCAGCAGCCAACGGTCTTGCGCGCGCA
CTCGATGCCGAGATCGGCTTGACGGAAGAGCAGCTGGTTCAACTCTCGTCCGAGTTCGAA
GGTCACCCGGACAATGCGTCTGCCAGTGTTCTCGGTGGCGCAGTCGTCTCGTGGAGTTGC
CCACCGGCCGTCGAAGGCGACGAGCCGATCTACTCCGCGGCGAAACTCGATGTCCATCCC
GACATCCGTGCTGTGGCACTGGTTCCCGAGGAGCGGTCGTCCACCGCACACACTCGTGGC
CTCCTGCCCGAATTGGTTCCGCACCAGGATGCCTCGTTCAACGCGAGCCGCAGCGCGCTG
GCTGTCGTTGCGCTCACTGCTCGGCCCGATCTGTTGATGGCAGCCACCGAGGATCGCCTG
CATCAGGCGCAGCGCGCACCCGCACTGCCGCTCACGACGCGATGGATCGGGATCCTGCGC
GAGGCGGGCATTGCCGCGACCGTTTCGGGAGCAGGCCCCACCGTGTTGGCGCTCAGCACA
GAGCCTTTCCCCGTCGAGCTCGCCGAAGCGGCGCGGGCAGACGGACTACGTGTGCTCGAA
TTGGACATCGCCGACGGCGTCGAAGTATCCACGACGACGGTCTGA


>RER_39200 homoserine kinase
MTITLPIGLSVTARVPASSANLGPGFDTLGLALGLYDEIVVTTTDSGLQIRVEGEGAADV
PWGPSHLVVRAIERGLEAAGVWASGLDVLCRNAIPHSRGLGSSASAAVGGLAAANGLARA
LDAEIGLTEEQLVQLSSEFEGHPDNASASVLGGAVVSWSCPPAVEGDEPIYSAAKLDVHP
DIRAVALVPEERSSTAHTRGLLPELVPHQDASFNASRSALAVVALTARPDLLMAATEDRL
HQAQRAPALPLTTRWIGILREAGIAATVSGAGPTVLALSTEPFPVELAEAARADGLRVLE
LDIADGVEVSTTTV

NBRC No.	clone name	start	stop	length(bp)
G12-001-169	REGR1S7018G07	4,274,552	4,317,871	43,320

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.