CDS Information : RER_39240

Display	1000bp 10000bp 100000bp Clone

Rhodococcus erythropolis PR4 (= NBRC 100887) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Rhodococcus erythropolis PR4 (= NBRC 100887)
Replicon	chromosome
Start / Stop / Direction	4,306,921 / 4,305,269 / -
Location	complement(4305269..4306921)
Type	CDS
Length	1,653 bp (550 aa)

Product	arginyl-tRNA synthetase Synonym: ArgRS Synonym: arginine--tRNA ligase
Gene name	argS
Functional category	Genetic Information Processing - Translation
EC number	6.1.1.19
Note
KEGG pathway	map:00330 KO:K01887 map:00970 KO:K01887
Sequence feature
References	Uniprot:P35868 Pubmed:8226683

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=0 SYR_RHOSR Arginyl-tRNA synthetase Arginine--tRNA ligase ArgRS Alignment 2 E=0 SYR_MYCS2 Arginyl-tRNA synthetase Arginine--tRNA ligase ArgRS Alignment 3 E=0 SYR_NOCFA Arginyl-tRNA synthetase Arginine--tRNA ligase ArgRS Alignment 4 E=0 SYR_MYCGI Arginyl-tRNA synthetase Arginine--tRNA ligase ArgRS Alignment 5 E=0 SYR_MYCVP Arginyl-tRNA synthetase Arginine--tRNA ligase ArgRS Alignment
HAMAP Database:HAMAP:20080521	MF_00123   SYR
InterPro Database:interpro:18.0	IPR001278 Arginyl-tRNA synthetase, class Ic (Family) PTHR11956   ARGINYL-TRNA SYNTHETASE TIGR00456   argS: arginyl-tRNA synthetase PF00750   tRNA-synt_1d IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site (Conserved_site) PS00178   AA_TRNA_LIGASE_I IPR001412 Aminoacyl-tRNA synthetase, class I (Domain) PS00178   AA_TRNA_LIGASE_I IPR001412 Aminoacyl-tRNA synthetase, class I (Family) PS00178   AA_TRNA_LIGASE_I IPR005148 Arginyl tRNA synthetase, class Ic, N-terminal (Domain) G3DSA:3.30.1360.70   no description PF03485   Arg_tRNA_synt_N SSF55190   Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain IPR008909 DALR anticodon binding (Domain) PF05746   DALR_1 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (Domain) SSF47323   Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases IPR014729 Rossmann-like alpha/beta/alpha sandwich fold (Domain) G3DSA:3.40.50.620   no description IPR015945 Arginyl-tRNA synthetase, class Ic, core (Domain) PF00750   tRNA-synt_1d
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	550 amino acids
molecular mass	59,130.47 Da
pI	4.65
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 13.8 (76aa) 7.1 (39aa) 9.6 (53aa) 5.6 (31aa) 2.7 (15aa) 0.9 (5aa) 3.3 (18aa) 1.6 (9aa) 9.1 (50aa) 5.8 (32aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 4.5 (25aa) 0.5 (3aa) 3.1 (17aa) 2.7 (15aa) 3.6 (20aa) 3.5 (19aa) 2.4 (13aa) 5.8 (32aa) 8 (44aa) 6.2 (34aa)

>RER_39240 arginyl-tRNA synthetase
GTGACTCCAGCTGACCTTGCCGAACTGCTCCGCGGAACCGCAGCGAGCGTCCTTGCCGAT
CGTGGCCTCGACGTATCCGTGCTGCCCGAAACCCTTACCGTCGAGCGACCACGCAACCCC
GAGCACGGCGATTACGCCACCAACATTGCCATGCAGGTAGCCAAGAAGGTCGGCACCAAT
CCCCGCGAGCTGGCGGGCTGGATCGCCGAAGCCCTCACCGCTGCCGACGGAATCGAATCC
GCCGAGATCGCCGGACCCGGCTTCCTCAACATTCGGTTGGACAAGGACGCCCAGGGCGCG
ATCGTCGTGTCGGTTCTCGAAGCCGGTTCGTCGTACGGCTCGGGTGACTCCCTCGCCGGC
AAGAAGATCAACCTCGAATTCGTCTCGGCCAACCCCACCGGACCGATTCACCTCGGTGGA
ACCCGTTGGGCTGCAGTCGGAGACGCGCTCGGACGCATTCTGTCCGCGCAGGGTGGATTG
GTCACACGTGAGTACTACTTCAACGATCACGGTGCCCAGATCGACCGCTTCTCGCGTTCA
CTGATCGCTGCAGCGAAGGGTGAACCTGCTCCGGAAGACGGTTACGCCGGTGCATACATC
GCCGACATCGCCGCCTCGGTTCTGAAGCAGCGTCCCGACGTCATGGAGCTGCCCGCCGAC
GAGCAGCAGGAGACCTTCCGCGCCATCGGCGTCGAATTGATGTTCACGCACATCAAGCAG
ACCCTCCACGACTTCGGCGTCGACTTCGACGTCTACTTCCACGAGAACTCGCTCTTCGAA
TCCGGTGCGGTCGAGAAGGCCGTCGAATCCCTCAAGGGTTCGGGCAACCTCTTCCACGAA
GACGGTGCGTGGTGGCTCAAGAGCACCGACTACGGCGACGACAAGGACCGCGTCGTCATC
AAGAGCGACGGCAACGCCGCCTACATCGCCGGTGACATCGCCTACTTCCAGAACAAGCGC
GCCCGCGGGTTCGACCTCTGCATCTACATGCTCGGTGCCGACCATCACGGATACATCGGC
CGTCTCAAGGCTGCCGCGGCCGCATTCGGCGACGATCCGGACACCGTCGAGGTGCTGATC
GGCCAGATGGTCAACCTCGTCAAGGACGGCACTGCCGTCAAGATGAGCAAGCGCGCAGGC
ACCGTCATCACCCTCGACGACCTGGTCGAGGCAATCGGCGTCGACGCCTCGCGTTACGTC
ATGATCCGCTCGTCGGTCGACTCGAGCATCGACATCGATCTCGACCTGTGGACCAAGACC
AGCAGCGAGAACCCCGTCTACTACGTCCAGTACGCGCATGCACGCCTCTCGGCGATCGCT
CGCAACGCCGCGGACCTCGGTCTGTCCGCCGACGCGAGCAACCTCGCCCTGCTCACCGTC
GAGCAGGAGGGTGACCTCATCCGCACGATCGGCGAGTACCCACGCGTCGTGTCGAGCGCG
GCGAATCTGCGTGAGCCGCACCGTATTGCCCGCTACCTCGAAGAACTCGCGGGTGCGTAC
CACCGCTTCTACGGCGCGTGCCGCATCCTTCCGCAAGGCGACGAAGACGCCACCGACGTG
CACCGCGCGCGTCTGGCTCTCTGCGCCGCCACCCGACAGGTCCTGGCCAACGGCCTCGAA
CTGCTCGGCGTCACCGCACCGGAGCAAATGTGA


>RER_39240 arginyl-tRNA synthetase
MTPADLAELLRGTAASVLADRGLDVSVLPETLTVERPRNPEHGDYATNIAMQVAKKVGTN
PRELAGWIAEALTAADGIESAEIAGPGFLNIRLDKDAQGAIVVSVLEAGSSYGSGDSLAG
KKINLEFVSANPTGPIHLGGTRWAAVGDALGRILSAQGGLVTREYYFNDHGAQIDRFSRS
LIAAAKGEPAPEDGYAGAYIADIAASVLKQRPDVMELPADEQQETFRAIGVELMFTHIKQ
TLHDFGVDFDVYFHENSLFESGAVEKAVESLKGSGNLFHEDGAWWLKSTDYGDDKDRVVI
KSDGNAAYIAGDIAYFQNKRARGFDLCIYMLGADHHGYIGRLKAAAAAFGDDPDTVEVLI
GQMVNLVKDGTAVKMSKRAGTVITLDDLVEAIGVDASRYVMIRSSVDSSIDIDLDLWTKT
SSENPVYYVQYAHARLSAIARNAADLGLSADASNLALLTVEQEGDLIRTIGEYPRVVSSA
ANLREPHRIARYLEELAGAYHRFYGACRILPQGDEDATDVHRARLALCAATRQVLANGLE
LLGVTAPEQM

NBRC No.	clone name	start	stop	length(bp)
G12-001-169	REGR1S7018G07	4,274,552	4,317,871	43,320
G12-001-170	REGR1S7017A01	4,303,843	4,343,424	39,582

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.