DOGAN: CDS Information : RER

Display	Clone

Rhodococcus erythropolis PR4 (= NBRC 100887) chromosome

Overview
Genome
Clone

Center position		change
ID		change
Gene name		change

Metabolism

Carbohydrate Metabolism

Glycolysis / Gluconeogenesis

Pyruvate metabolism

Glyoxylate and dicarboxylate metabolism

Propanoate metabolism

Butanoate metabolism

Inositol metabolism

Inositol phosphate metabolism

Citrate cycle (TCA cycle)

Pentose phosphate pathway

Fructose and mannose metabolism

Galactose metabolism

Ascorbate and aldarate metabolism

Starch and sucrose metabolism

Aminosugars metabolism

Nucleotide sugars metabolism

Energy Metabolism

electron transport system

ATP synthesis

Sulfur metabolism

ferredoxin, thioredoxin, rubredoxin

Lipid Metabolism

Fatty acid biosynthesis (path 1)

Fatty acid biosynthesis (path 2)

Fatty acid metabolism

Synthesis and degradation of ketone bodies

Sterols biosynthesis

Glycerolipid metabolism

Phospholipid degradation

Nucleotide Metabolism

Purine metabolism

Pyrimidine metabolism

Amino Acid Metabolism

Glutamate metabolism & Nitrogen assimilation

Arginine and proline metabolism

Histidine metabolism

Tyrosine metabolism

Phenylalanine metabolism

Tryptophan metabolism

Phenylalanine, tyrosine and tryptophan biosynthesis

Urea cycle and metabolism of amino groups

Alanine and aspartate metabolism

Glycine, serine and threonine metabolism

Methionine metabolism

Cysteine metabolism

Valine, leucine and isoleucine degradation

Valine, leucine and isoleucine biosynthesis

Lysine biosynthesis

Lysine degradation

Metabolism of Cofactors and Vitamins

Thiamine metabolism

Riboflavin metabolism

Vitamin B6 metabolism

Nicotinate and nicotinamide metabolism

Pantothenate and CoA biosynthesis

Biotin metabolism

Folate biosynthesis

Porphyrin and chlorophyll metabolism

Ubiquinone biosynthesis

Biosynthesis of Secondary Metabolites and Biodegradation of Xenobiotics

Degradation of aromatic compounds

Degradation of others

Others

Genetic Information Processing

Transcription

RNA polymerase

HTH family transcriptional regulators

sigma factor

Translation

Ribosome

Translation factors

Aminoacyl-tRNA biosynthesis

Replication and Repair

DNA polymerase

Replication complex

Others

Environmental Information and Cellular Processing

Membrane Transport

ABC transporter

transporters

Protein export

Phosphotransferase system (PTS)

Signal Transduction

Two-component system

Cellular Processes

Peptidoglycan biosynthesis

Cell wall/membrane/envelope biogenesis

Cell division

Others

Unclassified

putative function (general)

uncharacterized protein

Transposon-related functions

hypothetical protein

hypothetical protein (prediction only)

Genome	Display	Sync
chromosome

Organism	Rhodococcus erythropolis PR4 (= NBRC 100887)
Replicon	chromosome
Start / Stop / Direction	4,307,138 / 4,307,965 / +
Location	4307138..4307965
Type	CDS
Length	828 bp (275 aa)

Product	hypothetical protein
Gene name
Functional category	Unclassified - hypothetical protein
EC number
Note
KEGG pathway
Sequence feature
References

BLASTP
Database:UniProtKB:14.0

show BLAST table

1	E=5e-99	Q0SGN0_RHOSR	Putative uncharacterized protein	Alignment
2	E=9e-82	Q5Z100_NOCFA	Putative uncharacterized protein	Alignment
3	E=2e-70	Q6XN34_RHOER	Putative uncharacterized protein	Alignment
4	E=5e-70	Q5YML6_NOCFA	Putative uncharacterized protein	Alignment
5	E=2e-68	Q3L9P0_RHOE4	Putative uncharacterized protein	Alignment

HAMAP

No significant hit

InterPro

No significant hit

SignalP

No significant hit

TMHMM

Transmembrane 1

SOSUI

Transmembrane 1

size of protein

275 amino acids

molecular mass

29,313.64 Da

pI

5.1

aa composition

Ala	Val	Leu	Ile	Phe	Trp	Pro	Met	Gly	Ser
10.5 (29aa)	5.1 (14aa)	5.5 (15aa)	6.2 (17aa)	1.5 (4aa)	1.8 (5aa)	10.2 (28aa)	1.5 (4aa)	8.7 (24aa)	8 (22aa)
Thr	Cys	Asn	Gln	Tyr	Lys	His	Arg	Asp	Glu
5.5 (15aa)	0.7 (2aa)	5.1 (14aa)	4.7 (13aa)	3.3 (9aa)	5.5 (15aa)	1.8 (5aa)	3.3 (9aa)	7.6 (21aa)	3.6 (10aa)

>RER_39250 hypothetical protein
ATGCCAAGCGGTTCCGATAGTCGCGGTCCCAACAAGAACTCCGGGGCCAAATCAGCCAAG
GCCATCAAGGCCGCCAACAAGAACAGTCGGCCGGCCAAGAAGGGCAAGGGCGGCGTCCCC
GCTCCCCGTCAGATCCCCTGGCTGTCGATCGGCGCCGGTGTGGCTGTGCTCGCACTCATC
GCCGTGCTCGGTATCAATCTGTGGCCCAAGGTCGAGGAGCGGCAGGCCCTCGAGCCGTAC
AAGTACAGCTCCGAGAACAAGGATCCGTCCGACAAGATCGACGGCGTCCTCAAGATCGAG
TACCCGGCCGGCCAGCACGTCGATTCCACTCAGCGCGTGGCGTACGACCAGACCCCGCCG
TTCGGTGGCCCGCACGACGCCACCTGGGCGAACTGCACCGGAACCGTGTACGCCGACCCG
ATTCGCACCGAGAACGCAGTCCACTCGCTCGAGCACGGCGCCATCTGGATCACGTACAAC
CCCGATCTCGTCGACCAGGACCAGATCGACAGCCTCGCCGCACGCGTCAACGGCAAGTCC
TACATGCTGATGTCGCCGTACCCCGGTCAGAGCAGCCCCATTTCTCTGCAGTCGTGGGGC
CATCGCCTCGAGATCGACAAGGCCGACGACGATCGCATCGATCAGTTCATCACCGCGTTG
AACCAGAACCCGAACGTCTACCCCGAGGTCGGAGCGAGCTGCACCAACCCGCTGTTCACC
CCGTCGACGTCGCCGTTCGATCCGACGCCTCCGGGCGCCGACGCCATCCAGATGGACGGC
ACGGGCGCTACCCCGGCCACCGACGAGCAGATTCCCGCCGGTGGATAG


>RER_39250 hypothetical protein
MPSGSDSRGPNKNSGAKSAKAIKAANKNSRPAKKGKGGVPAPRQIPWLSIGAGVAVLALI
AVLGINLWPKVEERQALEPYKYSSENKDPSDKIDGVLKIEYPAGQHVDSTQRVAYDQTPP
FGGPHDATWANCTGTVYADPIRTENAVHSLEHGAIWITYNPDLVDQDQIDSLAARVNGKS
YMLMSPYPGQSSPISLQSWGHRLEIDKADDDRIDQFITALNQNPNVYPEVGASCTNPLFT
PSTSPFDPTPPGADAIQMDGTGATPATDEQIPAGG

NBRC No.	clone name	start	stop	length(bp)
G12-001-169	REGR1S7018G07	4,274,552	4,317,871	43,320
G12-001-170	REGR1S7017A01	4,303,843	4,343,424	39,582

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.

CDS Information : RER_39250

Genomic map

Rhodococcus erythropolis PR4 (= NBRC 100887) chromosome

Location

Annotation

Computational search results

Calculated information (Amino acid sequence)

Sequence

Covered clones

Distribution of Our Microbial Genomic DNA clones