CDS Information : RER_39270

Display	1000bp 10000bp 100000bp Clone

Rhodococcus erythropolis PR4 (= NBRC 100887) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Rhodococcus erythropolis PR4 (= NBRC 100887)
Replicon	chromosome
Start / Stop / Direction	4,311,097 / 4,308,728 / -
Location	complement(4308728..4311097)
Type	CDS
Length	2,370 bp (789 aa)

Product	xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
Gene name	xfp
Functional category	Metabolism - Carbohydrate Metabolism
EC number	4.1.2.9 4.1.2.22
Note	bifunctional protein
KEGG pathway	map:00030 KO:K01621
Sequence feature
References	Uniprot:Q9AEM9 Pubmed:11292814

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=0 Q0SGM8_RHOSR Probable phosphoketolase Alignment 2 E=0 Q0RK45_FRAAA Putative phosphoketolase Alignment 3 E=0 A8L3K5_FRASN Phosphoketolase Alignment 4 E=0 A1R5T6_ARTAT D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase Alignment 5 E=0 Q3LFG2_PROFR Putative phosphoketolase Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR005593 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase (Family) PS60003   PHOSPHOKETOLASE_2 PF03894   XFP PS60002   PHOSPHOKETOLASE_1 IPR009014 Transketolase, C-terminal-like (Domain) SSF52922   TK C-terminal domain-like IPR012109 Phosphoketolase (Family) PIRSF017245   Phosphoketolase IPR019789 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, thiamine diphosphate binding site (Binding_site) PS60003   PHOSPHOKETOLASE_2 IPR019790 Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, conserved site (Conserved_site) PS60002   PHOSPHOKETOLASE_1
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	789 amino acids
molecular mass	87,076.18 Da
pI	5.68
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 9.3 (73aa) 7.2 (57aa) 10.5 (83aa) 3.9 (31aa) 2.7 (21aa) 2.5 (20aa) 6.2 (49aa) 2 (16aa) 8.4 (66aa) 6.6 (52aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 6 (47aa) 1.1 (9aa) 2.3 (18aa) 3.2 (25aa) 2.9 (23aa) 1.8 (14aa) 4.9 (39aa) 6.1 (48aa) 5.7 (45aa) 6.7 (53aa)

>RER_39270 xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
ATGACCGATCACCACTATTCCGAAGACCAGCTCGCGCTCGACCTGAAGTGGTGGGCAGCG
GCCAACTACCTGACCGTTGCGCAGATCTATCTGAAAGACAACACGCTTCTGCGGGAACCG
TTGCGAGCCGAGCACATCAAGCCTCGACTGCTCGGACACTGGGGGACCAGCCCTGGCCTG
TCGATGATCTACACGCTCCTCAATCGGCACATCGTCGCCACTGATGCTGACTGGCTGTAC
GTCACGGGCCCGGGGCACGGCGGCCCGGCGCTGGTCGCGTCGACGTATCTCGAGGGAACG
TATTCGGAGATCTATCCGGAAGTCTCGGACGACGCCGAGGGTATCCACCGGATGTGTCGG
CGATTCTCGGCTCCCGGCGGAGTGCCCAGCCATGTGAGTGTGCAGACACCCGGAAGCATC
CACGAAGGCGGCGAGCTCGGCTACGCCCTTGCACATGCGGCCGGCGCTGCCTTCGATCAT
CCGAACCTCGTGGTGGCCTGTGTGATCGGCGACGGCGAAGCGGAGACCGGGCCGTTGTCC
GGCTCGTGGAAGCTCCCGGCGTTCCTCAATCCACGACGCGACGGCGCGGTGTTGCCGATC
CTGCACGTGAACGGCGCCAAGATCGCGGGCCCGACCGTGTACGGGCGCAGCAGCGACGAG
GACATTCAGGCCTACCTCGGCGGCCAGGGGTGGGCGCCGATCGTCGTCTCCGGTGACGAC
CCCGACGTCGTGTTTCCTCAGTTGTATCAAGCGATCTCGCAGGCACACGAGAAGATCCGC
GAGATGCAGGGTGCCGCACGCCGCGGCGACGAGTGGACGGGTTCGTGGCCGGCAATAGTC
TTGCGGACGCCGAAAGGATGGACCGGTCCGCACACCGTCGACGGAATCTTGGTCGAGGGC
ACACATCGTGCGCACCAGGTGCCGTTGTCCGGCGTGCGAACCAACGAATCGCATCTGCGG
CAACTCGAAGAGTGGATGCGGTCGTACCGTCCGGACGAGTTGTTCGACGCCAACGGATCA
CTGGCCGCGGAACTGGCGGCGCTCTCGCCGGCGGGGGACAAACGCATGGGGAGCACTCCC
TACGCGAACGGTGGGCGACTTCGCGTCGATCTCCCGATGCCGCCGCTCGAAAAGTACGCG
CTTCCCATCCAATCCCCGGGTTCGACCTTCCACGAGACGACACGAGTTCTCGGCGAGCTT
CTGCGCGACATCTACGCCGCCACGGAAACCGAGGACAGCGGCGGGATCTTCCGACTCTTC
TGTCCGGACGAGACGTCGAGCAATCGCCTCGGCGCCGTGTTCGAGACAACCGACCGCTGC
TGGCAACTGCCGATCACCGACTACGACGACGGGCTGTCCGCGGACGGTCGTGTCATGGAG
GTCCTCAGCGAGCACCTCTGCGAGGGTTGGCTCGAGGGCTATCTGTTGTCCGGTCGACAC
GGGATGTTCGCGAGCTACGAAGCGTTTGCGATGGTGAGTGTGTCGATGCTCATCCAGCAC
GCCAAGTGGCTCCAACATGCCGTCGACCTGCCGTGGCGGGCGTCCGTCGCTTCGCTCAAC
GTGCTGCTGACCAGTACATGCTGGCGCAACGACCACAACGGATTCAGTCATCAGGGCCCC
GGCATGATCGACGCCGTTATTCCATTGGCACCCAGTGTGATCCGCGTGTGGCTACCGCCG
GACTCCAACACCTTGCTCTCGATCTCGGACCACTGCCTGCGTAGTACCGACCACGTCAAC
CTGATAGTCGTGGACAAGCAACCGCACCTGCAATACCTCACGCTCGAGCAAGCGCACGAG
CACTGCGCGGCGGGCGCTTCGGTGTGGGAATGGGCCGGAACCGAAGCACGCGGACAGGAA
CCGGACGTGGTCCTGGCCGCTGCGGGAGATGTGCCGACGCAGGAGATCCTGGCTGCTGCA
CAGTTGCTGCGCGATCACACGCCAGAACTGATCACCCGCGTCGTCAACGTCGTCGATCTG
ATGGCCCTGCTGACGCCAACCGAGCATCCCCACGGATTTGGGGAGCGTGTCTTCCTCGAT
TTGTTCACCGCGCAGACCGACGTCGTGTTCGCATTCCACGGATACTCGCGTGCGGTGCAC
GAACTGATTCACGGGCGTCCGAGTCCCGAACGCTTCCACGTTCGCGGATTCAGTGAACAG
GGAACAACCACAACACCGTTCGACATGGTTGTCCTCAACAAGATGAGCCGCTACCACCTG
GTGATCGAGGCGCTACGACGCTCCAAGCGTCGGCCGGCCGGGGCGTCCGAGTTGGCGGAG
TTCTGCCGCACACAGCTCGAAAAGCACTCGCGTTACATCGTCGAGCACCTCGAAGACATG
CCGGAGGTAGAAAACTGGACCTGGTCCTGA


>RER_39270 xylulose-5-phosphate/fructose-6-phosphate phosphoketolase
MTDHHYSEDQLALDLKWWAAANYLTVAQIYLKDNTLLREPLRAEHIKPRLLGHWGTSPGL
SMIYTLLNRHIVATDADWLYVTGPGHGGPALVASTYLEGTYSEIYPEVSDDAEGIHRMCR
RFSAPGGVPSHVSVQTPGSIHEGGELGYALAHAAGAAFDHPNLVVACVIGDGEAETGPLS
GSWKLPAFLNPRRDGAVLPILHVNGAKIAGPTVYGRSSDEDIQAYLGGQGWAPIVVSGDD
PDVVFPQLYQAISQAHEKIREMQGAARRGDEWTGSWPAIVLRTPKGWTGPHTVDGILVEG
THRAHQVPLSGVRTNESHLRQLEEWMRSYRPDELFDANGSLAAELAALSPAGDKRMGSTP
YANGGRLRVDLPMPPLEKYALPIQSPGSTFHETTRVLGELLRDIYAATETEDSGGIFRLF
CPDETSSNRLGAVFETTDRCWQLPITDYDDGLSADGRVMEVLSEHLCEGWLEGYLLSGRH
GMFASYEAFAMVSVSMLIQHAKWLQHAVDLPWRASVASLNVLLTSTCWRNDHNGFSHQGP
GMIDAVIPLAPSVIRVWLPPDSNTLLSISDHCLRSTDHVNLIVVDKQPHLQYLTLEQAHE
HCAAGASVWEWAGTEARGQEPDVVLAAAGDVPTQEILAAAQLLRDHTPELITRVVNVVDL
MALLTPTEHPHGFGERVFLDLFTAQTDVVFAFHGYSRAVHELIHGRPSPERFHVRGFSEQ
GTTTTPFDMVVLNKMSRYHLVIEALRRSKRRPAGASELAEFCRTQLEKHSRYIVEHLEDM
PEVENWTWS

NBRC No.	clone name	start	stop	length(bp)
G12-001-169	REGR1S7018G07	4,274,552	4,317,871	43,320
G12-001-170	REGR1S7017A01	4,303,843	4,343,424	39,582

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.