CDS Information : RER_39280

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Rhodococcus erythropolis PR4 (= NBRC 100887) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Rhodococcus erythropolis PR4 (= NBRC 100887)
Replicon	chromosome
Start / Stop / Direction	4,311,506 / 4,312,432 / +
Location	4311506..4312432
Type	CDS
Length	927 bp (308 aa)

Product	putative LysR family transcriptional regulator
Gene name
Functional category	Genetic Information Processing - Transcription
EC number
Note	Belongs to the LysR transcriptional regulator family, which includes the transcriptional activator protein LysR of Escherichia coli (P03030), the hydrogen peroxide-inducible genes activator OxyR of Escherichia coli (P11721) and the HTH-type transcriptional regulator GltC of Bacillus subtilis (P20668).
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=1e-127 Q0SFM8_RHOSR Probable transcriptional regulator, LysR family protein Alignment 2 E=1e-55 Q5Z0I4_NOCFA Putative transcriptional regulator Alignment 3 E=1e-51 A3PZU3_MYCSJ Transcriptional regulator, LysR family Alignment 4 E=2e-47 Q1B8R7_MYCSS Transcriptional regulator, LysR family Alignment 5 E=2e-47 A1UG90_MYCSK Transcriptional regulator, LysR family Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR000847 Bacterial regulatory protein, LysR (Domain) PS50931   HTH_LYSR PF00126   HTH_1 IPR005119 LysR, substrate-binding (Domain) PF03466   LysR_substrate IPR011991 Winged helix repressor DNA-binding (Domain) G3DSA:1.10.10.10   no description
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	308 amino acids
molecular mass	33,407.49 Da
pI	6.96
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 12 (37aa) 8.4 (26aa) 12.7 (39aa) 4.2 (13aa) 2.9 (9aa) 0.6 (2aa) 7.8 (24aa) 1.6 (5aa) 6.2 (19aa) 6.2 (19aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 6.5 (20aa) 1 (3aa) 1.6 (5aa) 3.9 (12aa) 1.6 (5aa) 1.6 (5aa) 2.6 (8aa) 8.1 (25aa) 3.6 (11aa) 6.8 (21aa)

>RER_39280 putative LysR family transcriptional regulator
ATGCCTCGCATCGATCCTGCTCCCACGTACACGATGCGTCAGCTGGCTGCGTTTGTCGCG
GTAGCCGAGACCGGGACGATCAGCGCCGCGGCCGAGCGCTTGCACCTCTCCCCCTCCGCC
CTGTCCGCGTCGCTCACCGAACTCGAACGCGCGCTCAAAGTTCAACTGTGCGTTCGCCGT
CGCTCATTCGGCATTCAACTGACCCGCACCGGTGAATCCGTTCTGGTGCGCGCCCGGGCG
CTACTTCAGCAAGCCGGGGAGCTCGAATCCGATGCGCTCGGAACCGGCGGAAGCGTGTCG
GGGCCCATCGCGATCGGTTGCTATCCCGCTCTGGGGCCGACGGTATTGCCGTCGATGATC
GCCGGGTTCACCCGTGAGAATCCCGACGCGCAAGTGGAGTTCCGCGAGGACACTCAGAAT
CGGCTCCAGACACATCTCGAGAACGGCGAGTTGGACCTCGCGATCGCTTACGACCTGGAC
CTGTCTCCACAATTGCGCACAGTTCCGTTGGCCATCCGCGAACCCTTGATCGTCCTGGGT
GCAGAACACCCACTCGCGCGGTCCGAGCGACCGATCCATCTTCCGGATCTCGCGGAACAC
CCGATGGTTCTCCTCGACGCGCCGCCGAGCACCAAACACGCGCTCGACGTCTGCCGCGCA
GGCGGATTCATCCCGAAGGTTGCATACAGAACCGCGAACTTCGAGACGGCGCGGGCATTT
GTCGGACGCGGACTCGGCTGGACGCTGTTGCTCCAGCGCCCCAAGATGGACGTCACGTAC
GAGGGGCTCGAGGTAGTCGTCAAGACCATCGCTTCCCCTGTCGTGCCGTCGGTGCACGTA
GTTCTCGCGTGGCACCAGAACACTCGCCTCAGCCGCGTCGCACGCGCTTTCATAGAATTC
GTTTCACCCTCGGAACCTGCCCAATAG


>RER_39280 putative LysR family transcriptional regulator
MPRIDPAPTYTMRQLAAFVAVAETGTISAAAERLHLSPSALSASLTELERALKVQLCVRR
RSFGIQLTRTGESVLVRARALLQQAGELESDALGTGGSVSGPIAIGCYPALGPTVLPSMI
AGFTRENPDAQVEFREDTQNRLQTHLENGELDLAIAYDLDLSPQLRTVPLAIREPLIVLG
AEHPLARSERPIHLPDLAEHPMVLLDAPPSTKHALDVCRAGGFIPKVAYRTANFETARAF
VGRGLGWTLLLQRPKMDVTYEGLEVVVKTIASPVVPSVHVVLAWHQNTRLSRVARAFIEF
VSPSEPAQ

NBRC No.	clone name	start	stop	length(bp)
G12-001-169	REGR1S7018G07	4,274,552	4,317,871	43,320
G12-001-170	REGR1S7017A01	4,303,843	4,343,424	39,582

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.