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CDS Information : RER_39290

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close this sectionGenomic map

Display Clone

Rhodococcus erythropolis PR4 (= NBRC 100887) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Rhodococcus erythropolis PR4 (= NBRC 100887)
Replicon chromosome
Start / Stop / Direction 4,312,561 / 4,313,889 / +
Location 4312561..4313889
Type CDS
Length 1,329 bp (442 aa)

close this sectionAnnotation

Product putative MFS transporter
Gene name
Functional category Environmental Information and Cellular Processing
- Membrane Transport
EC number
Note May be a metabolite:H+ symporter.
KEGG pathway
Sequence feature
References Uniprot:P76350 Pubmed:98192527

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=1e-176Q0SFM9_RHOSRMetabolite transporter, MFS superfamily proteinAlignment
2E=1e-113A4FDW9_SACENMetabolite transporter, MFS superfamilyAlignment
3E=1e-113Q1ATK6_RUBXDMajor facilitator superfamily MFS_1Alignment
4E=1e-105Q9KH22_RHOSOPutative 3-(2-hydroxyphenyl) propionic acid transporterAlignment
5E=1e-105Q0SJC9_RHOSRMetabolite transporter, MFS superfamily proteinAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR007114 Major facilitator superfamily (Family)
 [21-430]  37.218 PS50850
PS50850   MFS
IPR011701 Major facilitator superfamily MFS-1 (Domain)
 [25-396]  9.9e-20 PF07690
PF07690   MFS_1
IPR011701 Major facilitator superfamily MFS_1 (Family)
 [25-396]  9.9e-20 PF07690
PF07690   MFS_1
IPR016196 Major facilitator superfamily, general substrate transporter (Domain)
 [1-430]  1.8e-63 SSF103473
SSF103473   MFS general substrate transporter
IPR020846 Major facilitator superfamily domain (Domain)
 [21-430]  37.218 PS50850
PS50850   MFS
SignalP No significant hit
TMHMM 
 [21-43]  Transmembrane (i-o) [63-85]  Transmembrane (o-i) [105-127]  Transmembrane (i-o) [164-186]  Transmembrane (o-i) [193-215]  Transmembrane (i-o) [248-270]  Transmembrane (o-i) [277-299]  Transmembrane (i-o) [314-333]  Transmembrane (o-i) [340-362]  Transmembrane (i-o) [377-399]  Transmembrane (o-i) [404-426]  Transmembrane (i-o)
Transmembrane 11   
SOSUI 
 [52-74]  Transmembrane [116-138]  Transmembrane [164-186]  Transmembrane [195-217]  Transmembrane [247-269]  Transmembrane [282-301]  Transmembrane [316-338]  Transmembrane [378-400]  Transmembrane [407-429]  Transmembrane
Transmembrane 9   

close this sectionCalculated information (Amino acid sequence)

size of protein 442 amino acids
molecular mass 46,358.72 Da
pI 8.28
aa composition
AlaValLeuIlePheTrpProMetGlySer
15.2
(67aa)		8.1
(36aa)		11.8
(52aa)		7
(31aa)		6.1
(27aa)		1.6
(7aa)		4.8
(21aa)		3.4
(15aa)		10.2
(45aa)		6.1
(27aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.6
(29aa)		0.9
(4aa)		1.4
(6aa)		1.6
(7aa)		3.2
(14aa)		2.9
(13aa)		0.9
(4aa)		2.9
(13aa)		2.3
(10aa)		3.2
(14aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G12-001-169 REGR1S7018G07 4,274,552 4,317,871 43,320
G12-001-170 REGR1S7017A01 4,303,843 4,343,424 39,582

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.