CDS Information : RER_45840

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Rhodococcus erythropolis PR4 (= NBRC 100887) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Rhodococcus erythropolis PR4 (= NBRC 100887)
Replicon	chromosome
Start / Stop / Direction	5,021,337 / 5,022,041 / +
Location	5021337..5022041
Type	CDS
Length	705 bp (234 aa)

Product	two-component response regulator PrrA
Gene name	prrA
Functional category	Environmental Information and Cellular Processing - Signal Transduction
EC number
Note	Belongs to the OmpR response regulator family, which includes the transcriptional regulatory protein OmpR of Escherichia coli (P0AA16). RER_45850 is a cognate sensor kinase.
KEGG pathway
Sequence feature
References	Uniprot:P0A5Z6 Pubmed:11953357

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=1e-94 Q0S6Q4_RHOSR Response regulator, two-component system Alignment 2 E=1e-87 A1QPX7_MYCTF Two component response transcriptional regulatory protein prrA Two component system response transcriptional regulatory protein prrA Alignment 3 E=1e-87 A4KFK7_MYCTU Two component response transcriptional regulatory protein prrA Alignment 4 E=1e-87 A5U0U2_MYCTA Two component response transcriptional regulatory protein PrrA Alignment 5 E=1e-87 PRRA_MYCTU Transcriptional regulatory protein prrA Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR001789 Response regulator receiver (Domain) PD000039   PRRA_MYCTU_Q10531; PS50110   RESPONSE_REGULATORY SM00448   no description PF00072   Response_reg IPR001867 Transcriptional regulatory protein, C-terminal (Domain) PF00486   Trans_reg_C PD000329   Q9K850_BACHD_Q9K850; IPR011006 CheY-like (Domain) SSF52172   CheY-like IPR011991 Winged helix repressor DNA-binding (Domain) G3DSA:1.10.10.10   no description
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	234 amino acids
molecular mass	25,572.34 Da
pI	5.01
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 7.3 (17aa) 12.8 (30aa) 12.8 (30aa) 4.7 (11aa) 3 (7aa) 0.4 (1aa) 3.8 (9aa) 1.7 (4aa) 8.5 (20aa) 5.1 (12aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.6 (13aa) 0.4 (1aa) 3.8 (9aa) 0 (0aa) 1.3 (3aa) 2.6 (6aa) 1.3 (3aa) 9.8 (23aa) 9 (21aa) 6 (14aa)

>RER_45840 two-component response regulator PrrA
GTGACCGAGATACCGAAAATCCTCGTAGTCGACGACGACGCAGACGTCCTGACCTCACTC
GAACGCGGATTGCGGCTCTCGGGATTCACCGTACTGACGGCAGTGGACGGCGCCGACGCG
CTCCGAGTGATCTCCGACAAGCGACCGGACGCGGTAGTCCTCGACATCAACATGCCGGTG
CTCGACGGCACCGGTGTGGTGACGGCGCTTCGTGCCGCCGGCAACGAAATCCCGATCTGC
GTGCTCAGCGCACGCAACTCGGTCGACGATCGCATCGCCGGGCTCGAATCCGGCGCAGAC
GACTACATGGTCAAACCGTTTGTCCTCGCCGAACTGGTTGCCCGGATCCGCGCAATGCTC
CGACGCAGCAACACTCCGGCCGGTGATCACTCCGAGGGAACGAACACCCTGCGGGTCGGC
AACCTCGACATCGACCTCTCCGGCCGGCGGGTTCGCGTCGACGGCAAGGAAGTACCGCTC
ACCAAACGCGAATTCGAGCTACTCGAAGTGCTCGCTCACAATTCCGGCATCGTGCTTACT
CGCGAACGTCTCCTCGAACTCGTGTGGGGCTACGACTTCGTGGCCGACACCAACGTCGTG
GACGTCTTCATCGGCTACCTGCGTCGAAAGTTCGAATCCGGCGGTTCACCTCGTCTGCTG
CATACCGTTCGCGGCGTCGGGTTCGTGCTTCGGGAGAACCCGTGA


>RER_45840 two-component response regulator PrrA
MTEIPKILVVDDDADVLTSLERGLRLSGFTVLTAVDGADALRVISDKRPDAVVLDINMPV
LDGTGVVTALRAAGNEIPICVLSARNSVDDRIAGLESGADDYMVKPFVLAELVARIRAML
RRSNTPAGDHSEGTNTLRVGNLDIDLSGRRVRVDGKEVPLTKREFELLEVLAHNSGIVLT
RERLLELVWGYDFVADTNVVDVFIGYLRRKFESGGSPRLLHTVRGVGFVLRENP

NBRC No.	clone name	start	stop	length(bp)
G12-001-198	REGR1S8009G09	4,993,725	5,026,587	32,863
G12-001-199	REGR1S8017G11	5,017,871	5,050,980	33,110

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.