CDS Information : RER_45850

Display	1000bp 10000bp 100000bp Clone

Rhodococcus erythropolis PR4 (= NBRC 100887) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Rhodococcus erythropolis PR4 (= NBRC 100887)
Replicon	chromosome
Start / Stop / Direction	5,022,038 / 5,023,381 / +
Location	5022038..5023381
Type	CDS
Length	1,344 bp (447 aa)

Product	two-component histidine kinase PrrB
Gene name	prrB
Functional category	Environmental Information and Cellular Processing - Signal Transduction
EC number	2.7.13.-
Note	RER_45840 is a cognate response regulator.
KEGG pathway
Sequence feature
References	Uniprot:P0A5Z8 Pubmed:11953357

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=1e-152 Q0S6Q5_RHOSR Sensor protein Alignment 2 E=1e-111 Q5Z233_NOCFA Sensor protein Alignment 3 E=1e-92 A0R408_MYCS2 Sensor protein Alignment 4 E=2e-90 A1ULL9_MYCSK Integral membrane sensor signal transduction histidine kinase precursor Alignment 5 E=2e-90 Q1B3I1_MYCSS Periplasmic sensor signal transduction histidine kinase precursor Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR003594 ATP-binding region, ATPase-like (Domain) SM00387   no description SSF55874   ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase PF02518   HATPase_c G3DSA:3.30.565.10   no description IPR003660 Histidine kinase, HAMP region (Domain) PF00672   HAMP IPR003661 Histidine kinase A, N-terminal (Domain) PF00512   HisKA SM00388   no description IPR005467 Histidine kinase (Domain) PS50109   HIS_KIN IPR009082 Histidine kinase, homodimeric (Domain) SSF47384   Homodimeric domain of signal transducing histidine kinase
SignalP	Bacteria, Gram-positive
TMHMM	Transmembrane 3
SOSUI	Transmembrane 3

size of protein	447 amino acids
molecular mass	47,051.05 Da
pI	5.5
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 16.1 (72aa) 8.3 (37aa) 9.8 (44aa) 4.7 (21aa) 2.9 (13aa) 0.2 (1aa) 4.3 (19aa) 0.7 (3aa) 7.8 (35aa) 6 (27aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 8.3 (37aa) 0.7 (3aa) 1.8 (8aa) 2.2 (10aa) 0.9 (4aa) 1.3 (6aa) 1.8 (8aa) 9.4 (42aa) 7.6 (34aa) 5.1 (23aa)

>RER_45850 two-component histidine kinase PrrB
GTGAAGCGTCGCCGCTTCTCACTACGAACTCGCGTTGCCGCGGCCGCGGCACTGGGGGCG
ACGTTCATCGTCATCGCACTCGGTGTGGTCGTTGCATTGGCTATCGCACGAAACAATCTG
GCGCAGTTGGACCGTCGATTGGAGACGGCATCGACGGTCATCGTGGCCAATGCGGCTACA
GCGGGACCTTTTCTCGGCGCGTTCGGAGACGGCGGAGCGTTCTCCGTGACCATCCGCTCC
GACACCGACGGAACCGTCAAATCCAGTACCCCGACGCGACTGCCCGAATTACCGGTGGGC
TCGGCGACCGTCGACGTGGACGGTACGAAGTACCGGGCTTACACCGCCGAGGCCGACGGG
ATCAATGCCCTGGTCTCGCTGGCGGTTCCCTATGCCGAGGCGCGGGACATCACGGTCGAC
CAACAGCGTCAGGTTGCGTTCTTCGGCGTCGGAGCCGTAGCGGCCGCAGCCGCGTTGGGA
TGGTTGTTCGGTGGCCCGGCGGTGCGCCCACTCGTGGAATTGACCCGCCGGATCGCCAGG
CGAGATCCCGATCTCGCCACCGAGGTTTCCGGCATCCGTGAAGCGGACGAGCTTGCCGCA
GCAGCAGAATCGATGCTCAGCGACGTCGCCCGGGCACAGGCCGCGACCAACTCGGCCCTT
GCTGCCGCTCGGGACTTTGCTTCCGCGTCGGCTCACGAACTCCGAACTCCGTTGACGGCG
ATGCGAACCGACATCGAAGTGTTGTCCATTCACGATCTCGACCACGAGCAGCGACGTGAG
ATCCTCACAGATCTGGCCCGCGCACAGGGCCGCGTCGAATCGACTCTCCGGGACCTGGAG
CGACTGGCGAAGGGCGAGTTGTCGACGGCTGAGGACTTCAAGGACACCGATTTGACCGAG
GTATGCGACATCGCGGCCGACGATGCACGACGCCACCACCCGAGCGTCGATGTCAGCGTC
GTCACGGTGGATTCCCCACTCCCCTATTGCATCCGGGCCCTTCCCGGCGGAATCCGGTTG
ATCCTCGACAACGCGATCACCAATGCAGTCCGCCACGGCGGCGCGAGCACGGTGCGCATC
ACCCTCGCCCGCCCGGTCGATTCACCGGACACCGTCACGATCACGATCGACGACAACGGT
TGCGGAATACCGGCCGAGGAACGCTCGAGCGTCTTCGAACGCTTCACTCGCGGATCGACG
GCAGGCAAGACGGGTTCCGGTTTGGGCCTGGCGCTGGTGGCGCAGCAGGCGGCCCTGCAC
GGCGGACGCACGACATTTCACGACAGTCCGCTCGGCGGGGCTCGCCTGCTGGTCGAACTC
AGGGATCAGCCCGGACCCGAATAG


>RER_45850 two-component histidine kinase PrrB
MKRRRFSLRTRVAAAAALGATFIVIALGVVVALAIARNNLAQLDRRLETASTVIVANAAT
AGPFLGAFGDGGAFSVTIRSDTDGTVKSSTPTRLPELPVGSATVDVDGTKYRAYTAEADG
INALVSLAVPYAEARDITVDQQRQVAFFGVGAVAAAAALGWLFGGPAVRPLVELTRRIAR
RDPDLATEVSGIREADELAAAAESMLSDVARAQAATNSALAAARDFASASAHELRTPLTA
MRTDIEVLSIHDLDHEQRREILTDLARAQGRVESTLRDLERLAKGELSTAEDFKDTDLTE
VCDIAADDARRHHPSVDVSVVTVDSPLPYCIRALPGGIRLILDNAITNAVRHGGASTVRI
TLARPVDSPDTVTITIDDNGCGIPAEERSSVFERFTRGSTAGKTGSGLGLALVAQQAALH
GGRTTFHDSPLGGARLLVELRDQPGPE

NBRC No.	clone name	start	stop	length(bp)
G12-001-198	REGR1S8009G09	4,993,725	5,026,587	32,863
G12-001-199	REGR1S8017G11	5,017,871	5,050,980	33,110

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.