CDS Information : RER_45930

Display	1000bp 10000bp 100000bp Clone

Rhodococcus erythropolis PR4 (= NBRC 100887) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Rhodococcus erythropolis PR4 (= NBRC 100887)
Replicon	chromosome
Start / Stop / Direction	5,033,822 / 5,032,584 / -
Location	complement(5032584..5033822)
Type	CDS
Length	1,239 bp (412 aa)

Product	conserved hypothetical protein
Gene name
Functional category	Unclassified - hypothetical protein
EC number
Note	Similar to the N-terminal region of the acetoin catabolism regulatory protein AcoR of Alcaligenes eutrophus H16 (P28614).
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=1e-110 Q1BED7_MYCSS Putative GAF sensor protein Alignment 2 E=1e-110 A1UAJ7_MYCSK Putative GAF sensor protein Alignment 3 E=1e-110 A3PU53_MYCSJ Putative GAF sensor protein Alignment 4 E=1e-107 A4T2Y6_MYCGI Putative GAF sensor protein Alignment 5 E=1e-106 A1T378_MYCVP Putative GAF sensor protein Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR001867 Transcriptional regulatory protein, C-terminal (Domain) PF00486   Trans_reg_C IPR003018 GAF (Domain) PF01590   GAF
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	412 amino acids
molecular mass	44,582.00 Da
pI	9.22
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 12.1 (50aa) 7.8 (32aa) 10.2 (42aa) 4.1 (17aa) 1 (4aa) 1.9 (8aa) 6.3 (26aa) 2.9 (12aa) 7.8 (32aa) 9.2 (38aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.1 (21aa) 1.2 (5aa) 1.7 (7aa) 2.4 (10aa) 1.7 (7aa) 1.7 (7aa) 1.7 (7aa) 10.4 (43aa) 4.6 (19aa) 6.1 (25aa)

>RER_45930 conserved hypothetical protein
GTGATCGGCGCAACGAATCGACTCGAACCGGCCCTGGGTAGTGGTGAAGACCCGGCGCAG
TACGCACGTGTTCTCGAATCCGTGTACGAAGCAACGATGTCCGGGCGCAAACCGCCCGCG
CGCCCGCGCTCCGTGATCGCCGATTCGTGGTCGCGTCTGCGCGCCCTCGGTCTCGATCCG
GAGCGGTGTTCGATCACGAAGACCACTCGTGCCTCGGAGATCGAAGAGAGGCGGGGTGCG
GCCGGAATGACGGAGATCTTCGACGAGGCGGTACGCGGTCTGGCACCGCTCGTCGGCCCG
GACGACGCGAATTTGATAGTGGTGGCGGACCGACAGGGTCGCATCCTCTGGCGCCACGGG
CCCGGTCGAATGCTGGATCGGGCCGAACGCCTCGGGATGATCGAGGGTGCGTCGTGGACC
GAGGAAGCTGTCGGTACCAACGGGATCGGTACTTCGTTGGCATCAGGTTCGGCAGTGCAG
GTGTTCTCGGCCGAGCACTACTCGCGCTCGCAGCATCCGTGGACTTGCTCCGGGGCGACG
GTTCGGGATCCGCGTAGTCGCCGGGCGCTCGCCGTCGTCAACGTCGCCGGCGCCGCAGGC
ACTGTCCACCCGTCGACTCTCGCTTTGGTGGACAGTGTGGCCAGGCTGGCGGAATCCGCA
CTGCGGGAGAAGCATCGAATCGGATTGGATCGGCTTCGGATGATCTCGGCGTCGACGCTG
GCTCGCGCGAGTCAGCCGACAATGGTTGTGGACCGTAGTGGCTGGGTTGCTGCGGTGGAC
TCGATGGCGCCGATCTACCGAATTGCACTACCGAAAGTGATGACCAGCGGCGAGCATTGG
CTCCCGTCTCTCGGATTGTGTATGTGCGAGCCACTTCCGGGCGGCTGGCTCATTCGCCCT
CAGGTGAACCCGGCGTCTGGAAATGTTTGTGCCGAAGTCGAATTGGACCTGCGAGATTCG
AATGCGATGGAACTGCGGTACTCCTCGGACTTGGGAAGTTGGAGTATCGACCTCAGCCCG
CGCCATTCGCAGATCCTCTTGGCTCTGACACAGGCGCCCGAGGGCCTCACGGCCTCGCAG
CTCGCCTCAGAGTTGTTCGGCGATCCGCGTAAGACGGTGACCGTCCGGGCCGAGATGTCG
AGGTTGCGTAAGCGATTGGCTGGAATCGTGCTGGCTCAGCCCTATCGCTTCGACCCGGCG
GTGCGGGTAAAAACCGTCCCTGCTGTGCGCCTTTATTAA


>RER_45930 conserved hypothetical protein
MIGATNRLEPALGSGEDPAQYARVLESVYEATMSGRKPPARPRSVIADSWSRLRALGLDP
ERCSITKTTRASEIEERRGAAGMTEIFDEAVRGLAPLVGPDDANLIVVADRQGRILWRHG
PGRMLDRAERLGMIEGASWTEEAVGTNGIGTSLASGSAVQVFSAEHYSRSQHPWTCSGAT
VRDPRSRRALAVVNVAGAAGTVHPSTLALVDSVARLAESALREKHRIGLDRLRMISASTL
ARASQPTMVVDRSGWVAAVDSMAPIYRIALPKVMTSGEHWLPSLGLCMCEPLPGGWLIRP
QVNPASGNVCAEVELDLRDSNAMELRYSSDLGSWSIDLSPRHSQILLALTQAPEGLTASQ
LASELFGDPRKTVTVRAEMSRLRKRLAGIVLAQPYRFDPAVRVKTVPAVRLY

NBRC No.	clone name	start	stop	length(bp)
G12-001-199	REGR1S8017G11	5,017,871	5,050,980	33,110

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.