small fontnormal fontlarge fontmail to

CDS Information : RER_45960

close allopen/close all

close this sectionGenomic map

Display Clone

Rhodococcus erythropolis PR4 (= NBRC 100887) chromosome

 Legend Jump
Overview 
Genome
Clone

close this sectionLocation

Organism Rhodococcus erythropolis PR4 (= NBRC 100887)
Replicon chromosome
Start / Stop / Direction 5,037,877 / 5,036,852 / -
Location complement(5036852..5037877)
Type CDS
Length 1,026 bp (341 aa)

close this sectionAnnotation

Product acetoin dehydrogenase E1 component beta subunit
Synonym: acetoin--2,6-dichlorophenolindophenol oxidoreductase
Gene name acoB
Functional category Metabolism
- Carbohydrate Metabolism
EC number 1.1.1.-
Note May form a multienzyme complex with the E1 alpha subunit (AcoA) (encoded by RER_45970), E2 component (AcoC) (encoded by RER_45950) and E3 component (AcoD) (encoded by Add9_044_0725).
KEGG pathway map:00650
Sequence feature
References Uniprot:Q48430 Pubmed:8206829

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=1e-159Q6FDF0_ACIADAcetoin:2,6-dichlorophenolindophenol oxidoreductase beta subunit
Acetoin:DCPIP oxidoreductase-beta
AO:DCPIP OR
TPP-dependent acetoin dehydrogenase E1 beta-subunit		Alignment
2E=1e-158B2I0C3_ACIBCPyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunitAlignment
3E=1e-158A3M5D3_ACIBTAcetoin:26-dichlorophenolindophenol oxidoreductase beta subunitAlignment
4E=1e-158B0VDZ4_ACIBYAcetoin:2,6-dichlorophenolindophenol oxidoreductase beta subunit
Acetoin:DCPIP oxidoreductase-beta
AO:DCPIP OR
TPP-dependent acetoin dehydrogenase E1 beta-subunit		Alignment
5E=1e-156Q48430_KLEPNAcetoin:DCPIP oxidoreductase beta subunitAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR005475 Transketolase, central region (Domain)
 [2-196]  6.9e-77 PF02779
PF02779   Transket_pyr
IPR005476 Transketolase, C-terminal (Domain)
 [209-331]  1.9e-54 PF02780
PF02780   Transketolase_C
IPR009014 Transketolase, C-terminal-like (Domain)
 [203-340]  9e-44 SSF52922
SSF52922   TK C-terminal domain-like
 [212-341]  4.2e-36 G3DSA:3.40.50.920
G3DSA:3.40.50.920   no description
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 341 amino acids
molecular mass 36,482.71 Da
pI 4.81
aa composition
AlaValLeuIlePheTrpProMetGlySer
12.9
(44aa)		10.3
(35aa)		7
(24aa)		5.9
(20aa)		4.1
(14aa)		0.6
(2aa)		6.2
(21aa)		2.3
(8aa)		8.5
(29aa)		5
(17aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.3
(18aa)		0.6
(2aa)		2.3
(8aa)		2.1
(7aa)		2.9
(10aa)		4.7
(16aa)		1.5
(5aa)		5
(17aa)		6.5
(22aa)		6.5
(22aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G12-001-199 REGR1S8017G11 5,017,871 5,050,980 33,110

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.