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CDS Information : RER_46050

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close this sectionGenomic map

Display Clone

Rhodococcus erythropolis PR4 (= NBRC 100887) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Rhodococcus erythropolis PR4 (= NBRC 100887)
Replicon chromosome
Start / Stop / Direction 5,046,933 / 5,045,425 / -
Location complement(5045425..5046933)
Type CDS
Length 1,509 bp (502 aa)

close this sectionAnnotation

Product glycerol kinase
Synonym: glycerokinase
Gene name glpK
Functional category Metabolism
- Lipid Metabolism
EC number 2.7.1.30
Note
KEGG pathway map:00561 KO:K00864
Sequence feature
References Uniprot:P0A6F3 Pubmed:8430315,9843423

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=0GLPK_SACENGlycerol kinase
ATP:glycerol 3-phosphotransferase
Glycerokinase
GK		Alignment
2E=0Q0S345_RHOSRGlycerol kinaseAlignment
3E=0Q6A5F3_PROACGlycerol kinase 2Alignment
4E=0A5CS23_CLAM3Putative glycerol kinaseAlignment
5E=0A4AKH7_9ACTNGlycerol kinase 2Alignment
HAMAP
Database:HAMAP:20080521 
 [2-499]  54.839 MF_00186
MF_00186   GLPK
InterPro
Database:interpro:18.0
IPR000577 Carbohydrate kinase, FGGY (Family)
 [4-253]  1e-96 PF00370
PF00370   FGGY_N
 [256-483]  5.4e-74 PF02782
PF02782   FGGY_C
 [134-146]  PS00933
PS00933   FGGY_KINASES_1
 [364-384]  PS00445
PS00445   FGGY_KINASES_2
 [52-499]  8.1e-232 PTHR10196
PTHR10196   XYLULOSE KINASE
IPR005999 Glycerol kinase (Family)
 [3-498]  TIGR01311
TIGR01311   glycerol_kin: glycerol kinase
 [52-499]  8.1e-232 PTHR10196:SF9
PTHR10196:SF9   GLYCEROL KINASE
IPR018483 Carbohydrate kinase, FGGY, conserved site (Conserved_site)
 [364-384]  PS00445
PS00445   FGGY_KINASES_2
 [134-146]  PS00933
PS00933   FGGY_KINASES_1
IPR018484 Carbohydrate kinase, FGGY, N-terminal (Domain)
 [4-253]  1e-96 PF00370
PF00370   FGGY_N
IPR018485 Carbohydrate kinase, FGGY, C-terminal (Domain)
 [256-483]  5.4e-74 PF02782
PF02782   FGGY_C
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 502 amino acids
molecular mass 54,265.01 Da
pI 4.37
aa composition
AlaValLeuIlePheTrpProMetGlySer
12
(60aa)		8.8
(44aa)		7.8
(39aa)		4.6
(23aa)		2.8
(14aa)		3
(15aa)		3.2
(16aa)		2.6
(13aa)		9.2
(46aa)		4.8
(24aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
8.2
(41aa)		1.2
(6aa)		4
(20aa)		3.2
(16aa)		2.2
(11aa)		3.2
(16aa)		1.6
(8aa)		4.6
(23aa)		7.2
(36aa)		6.2
(31aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G12-001-199 REGR1S8017G11 5,017,871 5,050,980 33,110
G12-001-200 REGR1S7007C04 5,042,142 5,085,203 43,062

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.