CDS Information : ROP_01030

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Rhodococcus opacus B4 chromosome	Legend Jump
Overview  Genome Proteome  Clone

Center position		change
ID		change
Gene name		change

Organism	Rhodococcus opacus B4
Replicon	chromosome
Start / Stop / Direction	88,183 / 87,242 / -
Location	complement(87242..88183)
Type	CDS
Length	942 bp (313 aa)

Product	putative flavin-containing amine oxidase (fragment)
Gene name
Functional category	Unclassified - putative function (general)
EC number
Note
KEGG pathway
Sequence feature
References	Family/Domain:IPR001613 Uniprot:P49253 Pubmed:7808446 Uniprot:P40974 Pubmed:8473854

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=1e-50 Q5YV66_NOCFA Putative oxidoreductase Alignment 2 E=3e-49 A6GKW3_9BURK Putative oxidoreductase Alignment 3 E=1e-48 B2HFK3_MYCMM Flavin-containing monoamine oxidase AofH Amine oxidase Alignment 4 E=2e-48 A1UD80_MYCSK Amine oxidase Flavin-containing Alignment 5 E=2e-48 Q73UY8_MYCPA Putative uncharacterized protein Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR002937 Amine oxidase (Domain) PF01593   Amino_oxidase
SignalP	Bacteria, Gram-positive
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	313 amino acids
molecular mass	33,758.43 Da
pI	5.36
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 9.9 (31aa) 8.3 (26aa) 7.3 (23aa) 3.8 (12aa) 3.2 (10aa) 2.2 (7aa) 7 (22aa) 4.5 (14aa) 10.2 (32aa) 7.3 (23aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 7.7 (24aa) 1.6 (5aa) 1 (3aa) 1.6 (5aa) 2.2 (7aa) 1 (3aa) 2.6 (8aa) 7.3 (23aa) 5.4 (17aa) 5.8 (18aa)

>ROP_01030 putative flavin-containing amine oxidase (fragment)
ATGACGTTCATGTCCTGGGTGACACGAACCACCAAGACCGTCTTCGCCCGGACGCTGTGG
AGCATCATCGGAGCGTTGACGATCGGCTCCCAGCCGGGCGAGATGTCGCTGCTGTACGTG
CTGCGACATGTGCGTGCACTCGGCGGAATGGACTCGTTGTTCGCCTCACTGTCTGGTGGC
AATGAACGCTCCTTCACCGGCGGCTCTGCCCGGCTGGCCGAGATGATGGCAGCCGACCTG
GGAGATCGCCTCGCGGTCGACTGCCCGATCTCTTCCGTTCGCTACCACGACCAGAGTGTC
GAGGTGACGACAGTCGAGGGTGAGGTGCTTCGCGCGCGTCATGTCATCATTGCGATGAGT
CCGGCGGATCGTGAGTCGATCCGGTTCGATCCGCCGCTACCTGCGGCACACCGGACGCTG
GGCGAACGAATGAGCATGGCACATGCGTACAAGGTGCATGTCGTCTACTCCTCGCCGTTC
TGGCGCGACCGCGGACTCAATGGTTCGATCATGACCGATACCGGTCCACTGATCCTCACC
TTCGACGACACTCCGCCGGATTCGCAGGAAGGAGTGATCGTCGGATTCGGTCGAGCTGAC
GGGGGACCGAACTGCTATCTGCCCGACGCCATGCCGTCCGATCCGGCCGAACGTAAGCGA
GCGGTGCTAGCGGGCTTGGCGCGCGCGTGCGGTGAGCAGGCTATGAGCCCCACCGAGTAC
CACGAGTTCGACTGGACGCAGGAGCCGTACACGGTCGGATGCATCCCTGTCTGGCCGCCG
GGGTTGGTCACCGCGGTGGGAGCGGGTTTTACCGACCCCGTGGGTCCGCTGCACTGGGCT
GGATCAGAACTGTCACCGAGGTGGGCAGGAACGATGGAGGGTGCGATCGTTACCGGCGAG
CGGGCGGCAACCGAGGTCGTCGTGCGCATGTGCACTGGTTAG


>ROP_01030 putative flavin-containing amine oxidase (fragment)
MTFMSWVTRTTKTVFARTLWSIIGALTIGSQPGEMSLLYVLRHVRALGGMDSLFASLSGG
NERSFTGGSARLAEMMAADLGDRLAVDCPISSVRYHDQSVEVTTVEGEVLRARHVIIAMS
PADRESIRFDPPLPAAHRTLGERMSMAHAYKVHVVYSSPFWRDRGLNGSIMTDTGPLILT
FDDTPPDSQEGVIVGFGRADGGPNCYLPDAMPSDPAERKRAVLAGLARACGEQAMSPTEY
HEFDWTQEPYTVGCIPVWPPGLVTAVGAGFTDPVGPLHWAGSELSPRWAGTMEGAIVTGE
RAATEVVVRMCTG

NBRC No.	clone name	start	stop	length(bp)
G13-001-003	RO1FO01L80009D04	62,334	100,826	38,493
G13-001-004	RO1FO01L80003O03	86,101	128,274	42,174

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.