CDS Information : ROP_01040

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Rhodococcus opacus B4 chromosome	Legend Jump
Overview  Genome Proteome  Clone

Center position		change
ID		change
Gene name		change

Organism	Rhodococcus opacus B4
Replicon	chromosome
Start / Stop / Direction	88,635 / 88,180 / -
Location	complement(88180..88635)
Type	CDS
Length	456 bp (151 aa)

Product	putative flavin-containing amine oxidase (fragment)
Gene name
Functional category	Unclassified - putative function (general)
EC number
Note
KEGG pathway
Sequence feature
References	Family/Domain:IPR001613 Uniprot:P40974 Pubmed:8473854

BLASTP Database:UniProtKB:14.0 show BLAST table	1 E=1e-22 Q5YV66_NOCFA Putative oxidoreductase Alignment 2 E=3e-22 Q5Y9F7_9ACTO Monoamine oxidase Alignment 3 E=3e-20 A1SDP7_NOCSJ Amine oxidase Alignment 4 E=1e-19 B1K8W5_BURCC Amine oxidase Alignment 5 E=3e-19 A2W1N6_9BURK Amine oxidase Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR002937 Amine oxidase (Domain) PF01593   Amino_oxidase
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	151 amino acids
molecular mass	16,229.28 Da
pI	5.28
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 7.9 (12aa) 6 (9aa) 11.3 (17aa) 6.6 (10aa) 2 (3aa) 1.3 (2aa) 3.3 (5aa) 1.3 (2aa) 13.9 (21aa) 7.3 (11aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 6 (9aa) 0 (0aa) 0.7 (1aa) 2.6 (4aa) 1.3 (2aa) 2 (3aa) 1.3 (2aa) 10.6 (16aa) 7.9 (12aa) 6.6 (10aa)

>ROP_01040 putative flavin-containing amine oxidase (fragment)
GTGAACACCGATACCGATTTCGTTGACGTCATCGTCATTGGCGGAGGTCTTTCCGGCCTG
ACCGCTGCGCGTCGTCTGATCCAGGCAGGGATCACGTCTATTCGCGTCCTGGAAGCCAAG
GACCGGGTGGGTGGGAGAACGCGTCTGCGTACGCTGGGCGGCGGGCGCGTCGTCGAGGAC
GGCGGGCAGCTGATCGGTCCCGAGTACCACCGGCTCCAAGCGCTCGGTGAGGAACGGGGA
ATCGAGACCTGGCCTCACTACGACGCCGGCAAGTCCATCATCGAGCGTGATGGACGTGTC
CTCGAGTTCAGCGGGTCCATGCCCTGGAGCAGCGATCCGATCGGCTCGGCAGACTTCGCC
CAGTCACTGCTTCGCCTCGGACGATTGGTGAAGAGTGCACCGGCCGATGACGAACTGGGC
ACACTCGAGGCGGCGCGACTCGACTCGACTCGATGA


>ROP_01040 putative flavin-containing amine oxidase (fragment)
MNTDTDFVDVIVIGGGLSGLTAARRLIQAGITSIRVLEAKDRVGGRTRLRTLGGGRVVED
GGQLIGPEYHRLQALGEERGIETWPHYDAGKSIIERDGRVLEFSGSMPWSSDPIGSADFA
QSLLRLGRLVKSAPADDELGTLEAARLDSTR

NBRC No.	clone name	start	stop	length(bp)
G13-001-003	RO1FO01L80009D04	62,334	100,826	38,493
G13-001-004	RO1FO01L80003O03	86,101	128,274	42,174

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.