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CDS Information : ROP_01060

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close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 chromosome

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Overview 
Genome
Proteome 
Clone

close this sectionLocation

Organism Rhodococcus opacus B4
Replicon chromosome
Start / Stop / Direction 90,495 / 89,089 / -
Location complement(89089..90495)
Type CDS
Length 1,407 bp (468 aa)

close this sectionAnnotation

Product putative NCS1 family transporter
Gene name
Functional category Environmental Information and Cellular Processing
- Membrane Transport (01310)
EC number
Note Belongs to the nucleobase:cation symporter-1 (NCS1) family (TC 2.A.39).
KEGG pathway
Sequence feature
References Uniprot:P17064 Pubmed:2191181

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=3e-97P94369_BACSUYxlA proteinAlignment
2E=3e-96A7ZA99_BACA2YxlAAlignment
3E=3e-90B1JYZ6_BURCCPermease for cytosine/purines uracil thiamine allantoinAlignment
4E=3e-90A2VRE7_9BURKPutative uncharacterized proteinAlignment
5E=5e-90A0K674_BURCHPermease for cytosine/purines, uracil, thiamine, allantoinAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR001248 Permease for cytosine/purines, uracil, thiamine, allantoin (Family)
 [10-432]  1.1e-36 PF02133
PF02133   Transp_cyt_pur
SignalP No significant hit
TMHMM
 [23-45]  Transmembrane (i-o) [50-69]  Transmembrane (o-i) [90-112]  Transmembrane (i-o) [132-151]  Transmembrane (o-i) [156-173]  Transmembrane (i-o) [193-215]  Transmembrane (o-i) [236-258]  Transmembrane (i-o) [278-300]  Transmembrane (o-i) [321-339]  Transmembrane (i-o) [349-371]  Transmembrane (o-i) [391-410]  Transmembrane (i-o) [420-442]  Transmembrane (o-i)
Transmembrane 12   
SOSUI
 [42-64]  Transmembrane [93-115]  Transmembrane [123-145]  Transmembrane [154-176]  Transmembrane [190-212]  Transmembrane [238-260]  Transmembrane [263-285]  Transmembrane [290-312]  Transmembrane [316-338]  Transmembrane [347-369]  Transmembrane [392-411]  Transmembrane [425-447]  Transmembrane
Transmembrane 12   

close this sectionCalculated information (Amino acid sequence)

size of protein 468 amino acids
molecular mass 49,717.44 Da
pI 7.21
aa composition
AlaValLeuIlePheTrpProMetGlySer
11.3
(53aa)
13.9
(65aa)
10
(47aa)
6.6
(31aa)
6.6
(31aa)
1.3
(6aa)
4.9
(23aa)
3.4
(16aa)
9.6
(45aa)
7.7
(36aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.5
(21aa)
0.4
(2aa)
2.1
(10aa)
2.6
(12aa)
3.4
(16aa)
0.9
(4aa)
1.5
(7aa)
4.1
(19aa)
3.2
(15aa)
1.9
(9aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-003 RO1FO01L80009D04 62,334 100,826 38,493
G13-001-004 RO1FO01L80003O03 86,101 128,274 42,174

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.