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CDS Information : ROP_01070

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close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 chromosome

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close this sectionLocation

Organism Rhodococcus opacus B4
Replicon chromosome
Start / Stop / Direction 91,703 / 90,492 / -
Location complement(90492..91703)
Type CDS
Length 1,212 bp (403 aa)

close this sectionAnnotation

Product putative oxidoreductase
Gene name
Functional category Unclassified
- putative function (general)
EC number
Note
KEGG pathway
Sequence feature
References Family/Domain:IPR006076

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=4e-36A0GXD2_9CHLRFAD dependent oxidoreductaseAlignment
2E=1e-34A9WDR6_CHLAAFAD dependent oxidoreductaseAlignment
3E=1e-34B2QRS4_9CHLRFAD dependent oxidoreductaseAlignment
4E=2e-33A5UZV9_ROSS1FAD dependent oxidoreductaseAlignment
5E=1e-31A4JTH1_BURVGFAD dependent oxidoreductaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR006076 FAD dependent oxidoreductase (Domain)
 [5-362]  5.3e-73 PF01266
PF01266   DAO
IPR006076 FAD dependent oxidoreductase (Family)
 [5-362]  5.3e-73 PF01266
PF01266   DAO
IPR006231 Malate:quinone-oxidoreductase (Family)
 [6-220]  1e-23 PTHR13847:SF14
PTHR13847:SF14   FAD OXIDOREDUCTASE
SignalP
 [1-25]  0.89 Signal
Bacteria, Gram-positive   
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 403 amino acids
molecular mass 42,718.71 Da
pI 4.36
aa composition
AlaValLeuIlePheTrpProMetGlySer
12.2
(49aa)
9.2
(37aa)
8.9
(36aa)
3.7
(15aa)
3
(12aa)
1
(4aa)
4.7
(19aa)
2.2
(9aa)
10.9
(44aa)
7.9
(32aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4
(16aa)
0.7
(3aa)
2
(8aa)
3.7
(15aa)
2.7
(11aa)
0.7
(3aa)
2.2
(9aa)
6.5
(26aa)
6.9
(28aa)
6.7
(27aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-003 RO1FO01L80009D04 62,334 100,826 38,493
G13-001-004 RO1FO01L80003O03 86,101 128,274 42,174

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.