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CDS Information : ROP_01090

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close this sectionGenomic map

Display Clone

Rhodococcus opacus B4 chromosome

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Overview 
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Clone

close this sectionLocation

Organism Rhodococcus opacus B4
Replicon chromosome
Start / Stop / Direction 93,766 / 93,353 / -
Location complement(93353..93766)
Type CDS
Length 414 bp (137 aa)

close this sectionAnnotation

Product hypothetical protein
Gene name
Functional category Unclassified
- hypothetical protein
EC number
Note
KEGG pathway
Sequence feature
References

close this sectionComputational search results

BLASTP
Database:UniProtKB:14.0
1E=2e-18A1SHS6_NOCSJPutative uncharacterized protein precursorAlignment
2E=5e-07A3CLC3_STRSVEthanolamine utilization protein eutQ (Cobalamin-dependent degradation of ethanolamine), putativeAlignment
3E=8e-07A1SNZ1_NOCSJEthanolamine utilisation EutQ family proteinAlignment
4E=7e-06A6NTN5_9BACEPutative uncharacterized proteinAlignment
5E=9e-06A6NTM5_9BACEPutative uncharacterized proteinAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR011051 Cupin, RmlC-type (Domain)
 [22-129]  1.3e-12 SSF51182
SSF51182   RmlC-like cupins
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 137 amino acids
molecular mass 14,944.72 Da
pI 4.23
aa composition
AlaValLeuIlePheTrpProMetGlySer
10.2
(14aa)
6.6
(9aa)
8.8
(12aa)
5.1
(7aa)
2.9
(4aa)
1.5
(2aa)
7.3
(10aa)
2.2
(3aa)
10.9
(15aa)
2.2
(3aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.6
(9aa)
0
(0aa)
2.9
(4aa)
3.6
(5aa)
4.4
(6aa)
2.2
(3aa)
2.2
(3aa)
5.1
(7aa)
7.3
(10aa)
8
(11aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G13-001-003 RO1FO01L80009D04 62,334 100,826 38,493
G13-001-004 RO1FO01L80003O03 86,101 128,274 42,174

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.